Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL9A1P20849 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
COL9A1P20849 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.43■□□□□ 0.7
COL9A1P20849 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL9A1P20849 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL9A1P20849 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL9A1P20849 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.42■□□□□ 0.7
COL9A1P20849 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL9A1P20849 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL9A1P20849 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
COL9A1P20849 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.42■□□□□ 0.7
COL9A1P20849 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.42■□□□□ 0.7
COL9A1P20849 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL9A1P20849 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.42■□□□□ 0.7
COL9A1P20849 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL9A1P20849 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC19.42■□□□□ 0.7
COL9A1P20849 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.42■□□□□ 0.7
COL9A1P20849 NMU-202ENST00000505262 693 ntTSL 3 BASIC19.42■□□□□ 0.7
COL9A1P20849 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
COL9A1P20849 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC19.42■□□□□ 0.7
COL9A1P20849 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.42■□□□□ 0.7
COL9A1P20849 ORC5-208ENST00000626700 344 ntTSL 3 BASIC19.42■□□□□ 0.7
COL9A1P20849 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL9A1P20849 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL9A1P20849 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL9A1P20849 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL9A1P20849 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL9A1P20849 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL9A1P20849 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
COL9A1P20849 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
COL9A1P20849 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL9A1P20849 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL9A1P20849 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.42■□□□□ 0.7
COL9A1P20849 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL9A1P20849 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
COL9A1P20849 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.41■□□□□ 0.7
COL9A1P20849 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL9A1P20849 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.41■□□□□ 0.7
COL9A1P20849 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL9A1P20849 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL9A1P20849 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL9A1P20849 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.41■□□□□ 0.7
COL9A1P20849 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
COL9A1P20849 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.41■□□□□ 0.7
COL9A1P20849 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.41■□□□□ 0.7
COL9A1P20849 MED15P5-201ENST00000423150 992 ntBASIC19.41■□□□□ 0.7
COL9A1P20849 AC005034.1-201ENST00000426657 489 ntBASIC19.41■□□□□ 0.7
COL9A1P20849 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
COL9A1P20849 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL9A1P20849 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.41■□□□□ 0.7
COL9A1P20849 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.41■□□□□ 0.7
COL9A1P20849 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.41■□□□□ 0.7
COL9A1P20849 FAM197Y3-203ENST00000618346 717 ntBASIC19.41■□□□□ 0.7
COL9A1P20849 AL035252.4-201ENST00000624174 288 ntBASIC19.41■□□□□ 0.7
COL9A1P20849 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL9A1P20849 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL9A1P20849 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
COL9A1P20849 KRT8P11-201ENST00000409686 1436 ntBASIC19.41■□□□□ 0.7
COL9A1P20849 LINC00167-201ENST00000530583 1419 ntBASIC19.41■□□□□ 0.7
COL9A1P20849 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.41■□□□□ 0.7
COL9A1P20849 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL9A1P20849 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
COL9A1P20849 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL9A1P20849 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.4■□□□□ 0.7
COL9A1P20849 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL9A1P20849 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL9A1P20849 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL9A1P20849 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.4■□□□□ 0.7
COL9A1P20849 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL9A1P20849 SPCS2P1-201ENST00000561636 679 ntBASIC19.4■□□□□ 0.7
COL9A1P20849 AL049840.3-201ENST00000602669 611 ntBASIC19.4■□□□□ 0.7
COL9A1P20849 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC19.4■□□□□ 0.7
COL9A1P20849 AC244517.3-201ENST00000616254 1235 ntBASIC19.4■□□□□ 0.7
COL9A1P20849 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.4■□□□□ 0.7
COL9A1P20849 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL9A1P20849 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.4■□□□□ 0.7
COL9A1P20849 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.4■□□□□ 0.7
COL9A1P20849 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL9A1P20849 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.4■□□□□ 0.7
COL9A1P20849 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
COL9A1P20849 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.39■□□□□ 0.7
COL9A1P20849 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
COL9A1P20849 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL9A1P20849 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.39■□□□□ 0.69
COL9A1P20849 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL9A1P20849 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL9A1P20849 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.39■□□□□ 0.69
COL9A1P20849 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL9A1P20849 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC19.39■□□□□ 0.69
COL9A1P20849 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.39■□□□□ 0.69
COL9A1P20849 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC19.39■□□□□ 0.69
COL9A1P20849 AL596442.2-201ENST00000610240 980 ntBASIC19.39■□□□□ 0.69
COL9A1P20849 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC19.39■□□□□ 0.69
COL9A1P20849 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
COL9A1P20849 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.39■□□□□ 0.69
COL9A1P20849 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
COL9A1P20849 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL9A1P20849 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.39■□□□□ 0.69
COL9A1P20849 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.39■□□□□ 0.69
COL9A1P20849 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms