Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 IFNL4P1-201ENST00000607083 540 ntBASIC23.15■■□□□ 1.3
COL4A1P02462 AC010240.3-201ENST00000607688 395 ntBASIC23.15■■□□□ 1.3
COL4A1P02462 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
COL4A1P02462 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A1P02462 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
COL4A1P02462 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC23.14■■□□□ 1.3
COL4A1P02462 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC23.14■■□□□ 1.3
COL4A1P02462 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.3
COL4A1P02462 AL109659.2-201ENST00000606809 1674 ntBASIC23.14■■□□□ 1.3
COL4A1P02462 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC23.14■■□□□ 1.3
COL4A1P02462 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL4A1P02462 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL4A1P02462 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC23.14■■□□□ 1.29
COL4A1P02462 PVRIG2P-201ENST00000435460 978 ntBASIC23.14■■□□□ 1.29
COL4A1P02462 RN7SL510P-201ENST00000581311 263 ntBASIC23.14■■□□□ 1.29
COL4A1P02462 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC23.14■■□□□ 1.29
COL4A1P02462 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL4A1P02462 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
COL4A1P02462 UBC-206ENST00000538617 1303 ntTSL 5 BASIC23.14■■□□□ 1.29
COL4A1P02462 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL4A1P02462 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL4A1P02462 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
COL4A1P02462 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A1P02462 KATNBL1P6-202ENST00000562413 1466 ntBASIC23.13■■□□□ 1.29
COL4A1P02462 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A1P02462 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A1P02462 MIR662-201ENST00000384847 95 ntBASIC23.13■■□□□ 1.29
COL4A1P02462 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC23.13■■□□□ 1.29
COL4A1P02462 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A1P02462 SDHD-206ENST00000528182 754 ntTSL 3 BASIC23.13■■□□□ 1.29
COL4A1P02462 NAT14-202ENST00000587400 416 ntTSL 5 BASIC23.13■■□□□ 1.29
COL4A1P02462 TEN1-204ENST00000588202 862 ntTSL 3 BASIC23.13■■□□□ 1.29
COL4A1P02462 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
COL4A1P02462 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC23.13■■□□□ 1.29
COL4A1P02462 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC23.13■■□□□ 1.29
COL4A1P02462 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A1P02462 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A1P02462 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A1P02462 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A1P02462 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC23.13■■□□□ 1.29
COL4A1P02462 BID-204ENST00000399767 2129 ntTSL 2 BASIC23.13■■□□□ 1.29
COL4A1P02462 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC23.13■■□□□ 1.29
COL4A1P02462 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A1P02462 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC23.13■■□□□ 1.29
COL4A1P02462 FP475955.4-201ENST00000623131 1990 ntBASIC23.13■■□□□ 1.29
COL4A1P02462 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A1P02462 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A1P02462 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC23.13■■□□□ 1.29
COL4A1P02462 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A1P02462 CHCHD2P8-201ENST00000429873 447 ntBASIC23.13■■□□□ 1.29
COL4A1P02462 BX276092.5-203ENST00000456199 560 ntBASIC23.13■■□□□ 1.29
COL4A1P02462 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL4A1P02462 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC23.13■■□□□ 1.29
COL4A1P02462 AC092329.2-201ENST00000598402 547 ntBASIC23.13■■□□□ 1.29
COL4A1P02462 AL121672.3-201ENST00000608644 468 ntBASIC23.13■■□□□ 1.29
COL4A1P02462 AL691432.3-201ENST00000621860 400 ntBASIC23.13■■□□□ 1.29
COL4A1P02462 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC23.13■■□□□ 1.29
COL4A1P02462 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC23.13■■□□□ 1.29
COL4A1P02462 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A1P02462 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A1P02462 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A1P02462 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC23.12■■□□□ 1.29
COL4A1P02462 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC23.12■■□□□ 1.29
COL4A1P02462 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A1P02462 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A1P02462 HOXB1-202ENST00000577092 1414 ntBASIC23.12■■□□□ 1.29
COL4A1P02462 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A1P02462 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A1P02462 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A1P02462 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A1P02462 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A1P02462 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC23.12■■□□□ 1.29
COL4A1P02462 PRELID1P1-202ENST00000567272 903 ntBASIC23.12■■□□□ 1.29
COL4A1P02462 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL4A1P02462 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC23.12■■□□□ 1.29
COL4A1P02462 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC23.12■■□□□ 1.29
COL4A1P02462 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
COL4A1P02462 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
COL4A1P02462 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL4A1P02462 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL4A1P02462 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL4A1P02462 UBQLN4P1-201ENST00000461599 1801 ntBASIC23.11■■□□□ 1.29
COL4A1P02462 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
COL4A1P02462 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC23.11■■□□□ 1.29
COL4A1P02462 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL4A1P02462 KRT18P23-201ENST00000435622 1283 ntBASIC23.11■■□□□ 1.29
COL4A1P02462 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC23.11■■□□□ 1.29
COL4A1P02462 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
COL4A1P02462 AC104390.1-201ENST00000555663 520 ntBASIC23.11■■□□□ 1.29
COL4A1P02462 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC23.11■■□□□ 1.29
COL4A1P02462 CIB2-208ENST00000560618 804 ntTSL 2 BASIC23.11■■□□□ 1.29
COL4A1P02462 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC23.11■■□□□ 1.29
COL4A1P02462 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC23.11■■□□□ 1.29
COL4A1P02462 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
COL4A1P02462 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL4A1P02462 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL4A1P02462 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC23.11■■□□□ 1.29
COL4A1P02462 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
COL4A1P02462 AFG3L1P-217ENST00000557444 2447 ntBASIC23.1■■□□□ 1.29
COL4A1P02462 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 199.7 ms