Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
TNFP01375 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TNFP01375 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
TNFP01375 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFP01375 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.47■□□□□ 0.55
TNFP01375 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
TNFP01375 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.47■□□□□ 0.55
TNFP01375 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TNFP01375 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TNFP01375 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.46■□□□□ 0.55
TNFP01375 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
TNFP01375 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TNFP01375 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
TNFP01375 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.46■□□□□ 0.55
TNFP01375 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.46■□□□□ 0.55
TNFP01375 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.46■□□□□ 0.55
TNFP01375 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TNFP01375 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TNFP01375 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.46■□□□□ 0.55
TNFP01375 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.46■□□□□ 0.55
TNFP01375 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
TNFP01375 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TNFP01375 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TNFP01375 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TNFP01375 PCED1CP-201ENST00000419887 785 ntBASIC18.46■□□□□ 0.55
TNFP01375 UPK3BP1-201ENST00000428678 509 ntBASIC18.46■□□□□ 0.55
TNFP01375 AC034232.1-201ENST00000506026 1064 ntBASIC18.46■□□□□ 0.55
TNFP01375 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.46■□□□□ 0.55
TNFP01375 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.46■□□□□ 0.55
TNFP01375 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.46■□□□□ 0.55
TNFP01375 AC024243.1-201ENST00000609234 778 ntBASIC18.46■□□□□ 0.55
TNFP01375 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TNFP01375 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
TNFP01375 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.46■□□□□ 0.55
TNFP01375 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TNFP01375 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TNFP01375 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TNFP01375 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.46■□□□□ 0.55
TNFP01375 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
TNFP01375 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TNFP01375 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.46■□□□□ 0.55
TNFP01375 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
TNFP01375 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TNFP01375 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.45■□□□□ 0.54
TNFP01375 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TNFP01375 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TNFP01375 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TNFP01375 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TNFP01375 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
TNFP01375 AL512353.2-201ENST00000448759 1962 ntBASIC18.45■□□□□ 0.54
TNFP01375 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TNFP01375 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TNFP01375 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
TNFP01375 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TNFP01375 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.45■□□□□ 0.54
TNFP01375 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.45■□□□□ 0.54
TNFP01375 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
TNFP01375 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.45■□□□□ 0.54
TNFP01375 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.45■□□□□ 0.54
TNFP01375 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.45■□□□□ 0.54
TNFP01375 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.45■□□□□ 0.54
TNFP01375 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
TNFP01375 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TNFP01375 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TNFP01375 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.45■□□□□ 0.54
TNFP01375 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
TNFP01375 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.44■□□□□ 0.54
TNFP01375 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.44■□□□□ 0.54
TNFP01375 IRX1P1-201ENST00000438849 1838 ntBASIC18.44■□□□□ 0.54
TNFP01375 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TNFP01375 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
TNFP01375 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.44■□□□□ 0.54
TNFP01375 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TNFP01375 LINC01311-201ENST00000565162 1445 ntBASIC18.44■□□□□ 0.54
TNFP01375 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.44■□□□□ 0.54
TNFP01375 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.44■□□□□ 0.54
TNFP01375 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TNFP01375 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.44■□□□□ 0.54
TNFP01375 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TNFP01375 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC18.44■□□□□ 0.54
TNFP01375 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
TNFP01375 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.44■□□□□ 0.54
TNFP01375 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TNFP01375 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TNFP01375 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
TNFP01375 AC141586.3-201ENST00000562166 1838 ntBASIC18.44■□□□□ 0.54
TNFP01375 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.44■□□□□ 0.54
TNFP01375 RCC2P3-201ENST00000418112 1537 ntBASIC18.44■□□□□ 0.54
TNFP01375 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
TNFP01375 IER3-202ENST00000376377 1350 ntBASIC18.43■□□□□ 0.54
TNFP01375 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
TNFP01375 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.43■□□□□ 0.54
TNFP01375 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.43■□□□□ 0.54
TNFP01375 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TNFP01375 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TNFP01375 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TNFP01375 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.43■□□□□ 0.54
TNFP01375 FP475955.4-201ENST00000623131 1990 ntBASIC18.43■□□□□ 0.54
TNFP01375 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TNFP01375 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms