Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 SCARNA2-201ENST00000458748 420 ntBASIC26.6■■□□□ 1.85
NPHP4O75161 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
NPHP4O75161 AC096582.2-201ENST00000510860 516 ntBASIC26.6■■□□□ 1.85
NPHP4O75161 IGHV3-22-201ENST00000520721 359 ntBASIC26.6■■□□□ 1.85
NPHP4O75161 CAND2-206ENST00000626378 333 ntTSL 5 BASIC26.6■■□□□ 1.85
NPHP4O75161 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC26.6■■□□□ 1.85
NPHP4O75161 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
NPHP4O75161 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
NPHP4O75161 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
NPHP4O75161 AL109659.2-201ENST00000606809 1674 ntBASIC26.6■■□□□ 1.85
NPHP4O75161 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC26.6■■□□□ 1.85
NPHP4O75161 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC26.6■■□□□ 1.85
NPHP4O75161 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
NPHP4O75161 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
NPHP4O75161 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP4O75161 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP4O75161 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP4O75161 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
NPHP4O75161 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC26.59■■□□□ 1.85
NPHP4O75161 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP4O75161 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP4O75161 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC26.59■■□□□ 1.85
NPHP4O75161 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC26.59■■□□□ 1.85
NPHP4O75161 AL356488.2-201ENST00000602755 427 ntBASIC26.59■■□□□ 1.85
NPHP4O75161 AL355877.3-201ENST00000622820 899 ntBASIC26.59■■□□□ 1.85
NPHP4O75161 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP4O75161 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP4O75161 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC26.59■■□□□ 1.85
NPHP4O75161 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP4O75161 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP4O75161 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP4O75161 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP4O75161 AL691432.2-201ENST00000607222 2038 ntBASIC26.58■■□□□ 1.85
NPHP4O75161 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
NPHP4O75161 CSF3-203ENST00000394148 622 ntTSL 3 BASIC26.58■■□□□ 1.85
NPHP4O75161 HIST2H3DP1-201ENST00000401004 416 ntBASIC26.58■■□□□ 1.85
NPHP4O75161 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC26.58■■□□□ 1.85
NPHP4O75161 NMU-202ENST00000505262 693 ntTSL 3 BASIC26.58■■□□□ 1.85
NPHP4O75161 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC26.58■■□□□ 1.85
NPHP4O75161 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC26.58■■□□□ 1.85
NPHP4O75161 AC027601.4-201ENST00000611259 610 ntBASIC26.58■■□□□ 1.85
NPHP4O75161 FAM197Y3-203ENST00000618346 717 ntBASIC26.58■■□□□ 1.85
NPHP4O75161 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
NPHP4O75161 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC26.58■■□□□ 1.85
NPHP4O75161 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
NPHP4O75161 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
NPHP4O75161 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC26.58■■□□□ 1.85
NPHP4O75161 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC26.58■■□□□ 1.85
NPHP4O75161 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC26.58■■□□□ 1.85
NPHP4O75161 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
NPHP4O75161 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
NPHP4O75161 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP4O75161 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP4O75161 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC26.57■■□□□ 1.84
NPHP4O75161 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP4O75161 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC26.57■■□□□ 1.84
NPHP4O75161 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC26.57■■□□□ 1.84
NPHP4O75161 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP4O75161 MED15P5-201ENST00000423150 992 ntBASIC26.57■■□□□ 1.84
NPHP4O75161 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP4O75161 AC024563.2-201ENST00000603282 481 ntBASIC26.57■■□□□ 1.84
NPHP4O75161 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP4O75161 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP4O75161 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC26.57■■□□□ 1.84
NPHP4O75161 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
NPHP4O75161 AC104109.2-201ENST00000602919 1418 ntBASIC26.57■■□□□ 1.84
NPHP4O75161 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP4O75161 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP4O75161 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP4O75161 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC26.57■■□□□ 1.84
NPHP4O75161 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP4O75161 AL353692.3-201ENST00000407031 1396 ntBASIC26.57■■□□□ 1.84
NPHP4O75161 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP4O75161 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC26.57■■□□□ 1.84
NPHP4O75161 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP4O75161 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC26.56■■□□□ 1.84
NPHP4O75161 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC26.56■■□□□ 1.84
NPHP4O75161 ELP6-205ENST00000439305 880 ntTSL 2 BASIC26.56■■□□□ 1.84
NPHP4O75161 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC26.56■■□□□ 1.84
NPHP4O75161 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC26.56■■□□□ 1.84
NPHP4O75161 AC011840.4-201ENST00000578471 627 ntBASIC26.56■■□□□ 1.84
NPHP4O75161 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC26.56■■□□□ 1.84
NPHP4O75161 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP4O75161 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP4O75161 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP4O75161 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP4O75161 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP4O75161 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC26.56■■□□□ 1.84
NPHP4O75161 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC26.56■■□□□ 1.84
NPHP4O75161 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP4O75161 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
NPHP4O75161 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC26.56■■□□□ 1.84
NPHP4O75161 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC26.56■■□□□ 1.84
NPHP4O75161 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP4O75161 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP4O75161 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC26.56■■□□□ 1.84
NPHP4O75161 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC26.56■■□□□ 1.84
NPHP4O75161 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC26.56■■□□□ 1.84
NPHP4O75161 AC004967.1-201ENST00000453589 447 ntBASIC26.56■■□□□ 1.84
NPHP4O75161 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms