Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP1O15259 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP1O15259 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP1O15259 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP1O15259 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP1O15259 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP1O15259 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP1O15259 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP1O15259 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
NPHP1O15259 PPIH-202ENST00000372549 327 ntTSL 3 BASIC23.77■■□□□ 1.4
NPHP1O15259 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP1O15259 AL845331.1-201ENST00000424978 1190 ntBASIC23.77■■□□□ 1.4
NPHP1O15259 AC246785.2-201ENST00000432512 513 ntBASIC23.77■■□□□ 1.4
NPHP1O15259 GRAMD4P1-201ENST00000435181 1110 ntBASIC23.77■■□□□ 1.4
NPHP1O15259 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC23.77■■□□□ 1.4
NPHP1O15259 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC23.77■■□□□ 1.4
NPHP1O15259 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP1O15259 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
NPHP1O15259 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP1O15259 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC23.77■■□□□ 1.4
NPHP1O15259 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP1O15259 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP1O15259 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.39
NPHP1O15259 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC23.76■■□□□ 1.39
NPHP1O15259 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
NPHP1O15259 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC23.76■■□□□ 1.39
NPHP1O15259 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
NPHP1O15259 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NPHP1O15259 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NPHP1O15259 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC23.76■■□□□ 1.39
NPHP1O15259 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
NPHP1O15259 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC23.76■■□□□ 1.39
NPHP1O15259 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC23.76■■□□□ 1.39
NPHP1O15259 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC23.76■■□□□ 1.39
NPHP1O15259 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC23.76■■□□□ 1.39
NPHP1O15259 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC23.76■■□□□ 1.39
NPHP1O15259 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC23.76■■□□□ 1.39
NPHP1O15259 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
NPHP1O15259 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP1O15259 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC23.75■■□□□ 1.39
NPHP1O15259 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP1O15259 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP1O15259 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP1O15259 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP1O15259 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
NPHP1O15259 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
NPHP1O15259 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC23.75■■□□□ 1.39
NPHP1O15259 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP1O15259 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP1O15259 MCCD1P1-208ENST00000445732 328 ntBASIC23.75■■□□□ 1.39
NPHP1O15259 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC23.75■■□□□ 1.39
NPHP1O15259 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP1O15259 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC23.75■■□□□ 1.39
NPHP1O15259 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP1O15259 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC23.75■■□□□ 1.39
NPHP1O15259 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC23.75■■□□□ 1.39
NPHP1O15259 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP1O15259 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC23.75■■□□□ 1.39
NPHP1O15259 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP1O15259 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP1O15259 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP1O15259 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
NPHP1O15259 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP1O15259 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
NPHP1O15259 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC23.74■■□□□ 1.39
NPHP1O15259 AC016734.2-201ENST00000624325 1377 ntBASIC23.74■■□□□ 1.39
NPHP1O15259 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP1O15259 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC23.74■■□□□ 1.39
NPHP1O15259 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP1O15259 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP1O15259 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP1O15259 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
NPHP1O15259 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP1O15259 SKP2-204ENST00000508514 821 ntTSL 3 BASIC23.73■■□□□ 1.39
NPHP1O15259 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC23.73■■□□□ 1.39
NPHP1O15259 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC23.73■■□□□ 1.39
NPHP1O15259 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC23.73■■□□□ 1.39
NPHP1O15259 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC23.73■■□□□ 1.39
NPHP1O15259 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP1O15259 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP1O15259 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP1O15259 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC23.73■■□□□ 1.39
NPHP1O15259 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP1O15259 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
NPHP1O15259 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
NPHP1O15259 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
NPHP1O15259 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC23.72■■□□□ 1.39
NPHP1O15259 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC23.72■■□□□ 1.39
NPHP1O15259 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
NPHP1O15259 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
NPHP1O15259 AL023284.2-201ENST00000405850 579 ntBASIC23.72■■□□□ 1.39
NPHP1O15259 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
NPHP1O15259 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
NPHP1O15259 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
NPHP1O15259 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC23.72■■□□□ 1.39
NPHP1O15259 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC23.72■■□□□ 1.39
NPHP1O15259 AP002414.4-201ENST00000589764 1148 ntBASIC23.72■■□□□ 1.39
NPHP1O15259 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
NPHP1O15259 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC23.72■■□□□ 1.39
NPHP1O15259 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms