Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
CACNA1AO00555 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1AO00555 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1AO00555 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1AO00555 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1AO00555 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.79■□□□□ 0.44
CACNA1AO00555 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1AO00555 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CACNA1AO00555 AL023284.2-201ENST00000405850 579 ntBASIC17.79■□□□□ 0.44
CACNA1AO00555 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC17.79■□□□□ 0.44
CACNA1AO00555 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.79■□□□□ 0.44
CACNA1AO00555 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.79■□□□□ 0.44
CACNA1AO00555 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.79■□□□□ 0.44
CACNA1AO00555 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.79■□□□□ 0.44
CACNA1AO00555 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.79■□□□□ 0.44
CACNA1AO00555 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
CACNA1AO00555 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1AO00555 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1AO00555 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC17.79■□□□□ 0.44
CACNA1AO00555 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1AO00555 AL139400.1-201ENST00000366220 510 ntBASIC17.78■□□□□ 0.44
CACNA1AO00555 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1AO00555 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1AO00555 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.78■□□□□ 0.44
CACNA1AO00555 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.78■□□□□ 0.44
CACNA1AO00555 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.78■□□□□ 0.44
CACNA1AO00555 NOP2-220ENST00000545915 630 ntTSL 2 BASIC17.78■□□□□ 0.44
CACNA1AO00555 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.78■□□□□ 0.44
CACNA1AO00555 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CACNA1AO00555 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
CACNA1AO00555 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CACNA1AO00555 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1AO00555 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1AO00555 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC17.78■□□□□ 0.44
CACNA1AO00555 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1AO00555 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1AO00555 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CACNA1AO00555 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1AO00555 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.78■□□□□ 0.44
CACNA1AO00555 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.78■□□□□ 0.44
CACNA1AO00555 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CACNA1AO00555 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.78■□□□□ 0.44
CACNA1AO00555 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1AO00555 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1AO00555 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1AO00555 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
CACNA1AO00555 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.77■□□□□ 0.44
CACNA1AO00555 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1AO00555 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.77■□□□□ 0.44
CACNA1AO00555 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1AO00555 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1AO00555 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1AO00555 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1AO00555 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1AO00555 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1AO00555 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1AO00555 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1AO00555 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1AO00555 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1AO00555 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1AO00555 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC17.77■□□□□ 0.44
CACNA1AO00555 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
CACNA1AO00555 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CACNA1AO00555 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CACNA1AO00555 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CACNA1AO00555 AP005117.1-201ENST00000584346 1413 ntBASIC17.76■□□□□ 0.43
CACNA1AO00555 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1AO00555 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1AO00555 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.76■□□□□ 0.43
CACNA1AO00555 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1AO00555 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1AO00555 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1AO00555 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.76■□□□□ 0.43
CACNA1AO00555 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.76■□□□□ 0.43
CACNA1AO00555 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1AO00555 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.76■□□□□ 0.43
CACNA1AO00555 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1AO00555 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1AO00555 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.76■□□□□ 0.43
CACNA1AO00555 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.76■□□□□ 0.43
CACNA1AO00555 TSEN15P1-201ENST00000423257 515 ntBASIC17.76■□□□□ 0.43
CACNA1AO00555 AC009947.1-201ENST00000444350 727 ntBASIC17.76■□□□□ 0.43
CACNA1AO00555 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1AO00555 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1AO00555 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1AO00555 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.76■□□□□ 0.43
CACNA1AO00555 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.76■□□□□ 0.43
CACNA1AO00555 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1AO00555 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.75■□□□□ 0.43
CACNA1AO00555 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1AO00555 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CACNA1AO00555 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1AO00555 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.75■□□□□ 0.43
CACNA1AO00555 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.75■□□□□ 0.43
CACNA1AO00555 AC010240.3-201ENST00000607688 395 ntBASIC17.75■□□□□ 0.43
CACNA1AO00555 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CACNA1AO00555 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC17.75■□□□□ 0.43
CACNA1AO00555 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1AO00555 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1AO00555 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms