Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC87Q9NVE4 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC87Q9NVE4 Y_RNA.71-201ENST00000362892 104 ntBASIC3.28□□□□□ -1.88
CCDC87Q9NVE4 Y_RNA.634-201ENST00000364811 113 ntBASIC3.28□□□□□ -1.88
CCDC87Q9NVE4 RNU6-80P-201ENST00000384195 107 ntBASIC3.28□□□□□ -1.88
CCDC87Q9NVE4 Y_RNA.584-201ENST00000391090 114 ntBASIC3.28□□□□□ -1.88
CCDC87Q9NVE4 MIR1289-2-201ENST00000408360 111 ntBASIC3.28□□□□□ -1.88
CCDC87Q9NVE4 Y_RNA.621-201ENST00000411065 96 ntBASIC3.28□□□□□ -1.88
CCDC87Q9NVE4 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC87Q9NVE4 AC092427.1-202ENST00000430569 476 ntBASIC3.28□□□□□ -1.88
CCDC87Q9NVE4 AC011603.4-201ENST00000611325 277 ntBASIC3.28□□□□□ -1.88
CCDC87Q9NVE4 MIR6079-201ENST00000635807 62 ntBASIC3.28□□□□□ -1.88
CCDC87Q9NVE4 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC87Q9NVE4 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.89
CCDC87Q9NVE4 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
CCDC87Q9NVE4 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
CCDC87Q9NVE4 RNU6-460P-201ENST00000391158 108 ntBASIC3.27□□□□□ -1.89
CCDC87Q9NVE4 RNU6-735P-201ENST00000410612 107 ntBASIC3.27□□□□□ -1.89
CCDC87Q9NVE4 RNA5SP344-201ENST00000411081 104 ntBASIC3.27□□□□□ -1.89
CCDC87Q9NVE4 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC87Q9NVE4 AL603825.1-201ENST00000438481 80 ntBASIC3.27□□□□□ -1.89
CCDC87Q9NVE4 HMGN1P7-201ENST00000491722 313 ntBASIC3.27□□□□□ -1.89
CCDC87Q9NVE4 Y_RNA.676-201ENST00000516393 96 ntBASIC3.27□□□□□ -1.89
CCDC87Q9NVE4 RNU7-149P-201ENST00000516739 59 ntBASIC3.27□□□□□ -1.89
CCDC87Q9NVE4 Y_RNA.714-201ENST00000517065 90 ntBASIC3.27□□□□□ -1.89
CCDC87Q9NVE4 Pinc.1-201ENST00000616452 154 ntBASIC3.27□□□□□ -1.89
CCDC87Q9NVE4 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.27□□□□□ -1.89
CCDC87Q9NVE4 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.27□□□□□ -1.89
CCDC87Q9NVE4 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC87Q9NVE4 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC87Q9NVE4 Y_RNA.218-201ENST00000364218 104 ntBASIC3.26□□□□□ -1.89
CCDC87Q9NVE4 SNORD114-30-201ENST00000364448 72 ntBASIC3.26□□□□□ -1.89
CCDC87Q9NVE4 RNU6-1082P-201ENST00000364574 107 ntBASIC3.26□□□□□ -1.89
CCDC87Q9NVE4 RNA5SP467-201ENST00000391274 118 ntBASIC3.26□□□□□ -1.89
CCDC87Q9NVE4 CST2P1-201ENST00000425770 87 ntBASIC3.26□□□□□ -1.89
CCDC87Q9NVE4 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC87Q9NVE4 RNU2-56P-201ENST00000516826 190 ntBASIC3.26□□□□□ -1.89
CCDC87Q9NVE4 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
CCDC87Q9NVE4 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC87Q9NVE4 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC87Q9NVE4 ZNF271P-202ENST00000465539 1970 ntBASIC3.25□□□□□ -1.89
CCDC87Q9NVE4 SNORD114-6-201ENST00000364393 72 ntBASIC3.25□□□□□ -1.89
CCDC87Q9NVE4 RNU6-1072P-201ENST00000384703 107 ntBASIC3.25□□□□□ -1.89
CCDC87Q9NVE4 RNU6-443P-201ENST00000384780 107 ntBASIC3.25□□□□□ -1.89
CCDC87Q9NVE4 RNA5SP323-201ENST00000391094 133 ntBASIC3.25□□□□□ -1.89
CCDC87Q9NVE4 AL356320.1-201ENST00000429616 163 ntBASIC3.25□□□□□ -1.89
CCDC87Q9NVE4 AC104389.3-201ENST00000445629 235 ntBASIC3.25□□□□□ -1.89
CCDC87Q9NVE4 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC87Q9NVE4 AC233266.1-201ENST00000454518 96 ntBASIC3.25□□□□□ -1.89
CCDC87Q9NVE4 RNU4-57P-201ENST00000515980 135 ntBASIC3.25□□□□□ -1.89
CCDC87Q9NVE4 RNU6-1333P-201ENST00000516162 93 ntBASIC3.25□□□□□ -1.89
CCDC87Q9NVE4 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC87Q9NVE4 AC026271.5-201ENST00000577873 130 ntBASIC3.25□□□□□ -1.89
CCDC87Q9NVE4 AC087685.1-201ENST00000587507 141 ntBASIC3.25□□□□□ -1.89
CCDC87Q9NVE4 AL359881.1-201ENST00000602916 267 ntBASIC3.25□□□□□ -1.89
CCDC87Q9NVE4 AC242852.1-201ENST00000612151 96 ntBASIC3.25□□□□□ -1.89
CCDC87Q9NVE4 AC244015.1-201ENST00000622301 99 ntBASIC3.25□□□□□ -1.89
CCDC87Q9NVE4 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
CCDC87Q9NVE4 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC87Q9NVE4 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
CCDC87Q9NVE4 RPL39P40-201ENST00000445481 146 ntBASIC3.24□□□□□ -1.89
CCDC87Q9NVE4 RNU6-365P-201ENST00000517113 106 ntBASIC3.24□□□□□ -1.89
CCDC87Q9NVE4 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
CCDC87Q9NVE4 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC87Q9NVE4 Y_RNA.273-201ENST00000364703 102 ntBASIC3.23□□□□□ -1.89
CCDC87Q9NVE4 RNU6-915P-201ENST00000364943 103 ntBASIC3.23□□□□□ -1.89
CCDC87Q9NVE4 AL117342.1-201ENST00000404861 406 ntBASIC3.23□□□□□ -1.89
CCDC87Q9NVE4 MIR1262-201ENST00000408276 93 ntBASIC3.23□□□□□ -1.89
CCDC87Q9NVE4 SNRPGP10-201ENST00000432323 225 ntBASIC3.23□□□□□ -1.89
CCDC87Q9NVE4 RPS26P45-201ENST00000471748 340 ntBASIC3.23□□□□□ -1.89
CCDC87Q9NVE4 FAM35CP-201ENST00000554755 2470 ntBASIC3.23□□□□□ -1.89
CCDC87Q9NVE4 Y_RNA.757-201ENST00000578934 114 ntBASIC3.23□□□□□ -1.89
CCDC87Q9NVE4 U6.108-201ENST00000637764 58 ntBASIC3.23□□□□□ -1.89
CCDC87Q9NVE4 Y_RNA.253-201ENST00000364562 112 ntBASIC3.22□□□□□ -1.89
CCDC87Q9NVE4 HMGN2P3-201ENST00000433603 273 ntBASIC3.22□□□□□ -1.89
CCDC87Q9NVE4 HMGN2P5-201ENST00000436882 273 ntBASIC3.22□□□□□ -1.89
CCDC87Q9NVE4 RN7SKP179-201ENST00000516126 217 ntBASIC3.22□□□□□ -1.89
CCDC87Q9NVE4 RNU6-548P-201ENST00000517083 115 ntBASIC3.22□□□□□ -1.89
CCDC87Q9NVE4 AP002004.2-201ENST00000531656 154 ntBASIC3.22□□□□□ -1.89
CCDC87Q9NVE4 AC131055.1-201ENST00000584626 316 ntBASIC3.22□□□□□ -1.89
CCDC87Q9NVE4 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC3.22□□□□□ -1.89
CCDC87Q9NVE4 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
CCDC87Q9NVE4 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.21□□□□□ -1.89
CCDC87Q9NVE4 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.89
CCDC87Q9NVE4 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
CCDC87Q9NVE4 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC87Q9NVE4 Y_RNA.91-201ENST00000363042 107 ntBASIC3.21□□□□□ -1.9
CCDC87Q9NVE4 Y_RNA.120-201ENST00000363304 110 ntBASIC3.21□□□□□ -1.9
CCDC87Q9NVE4 Y_RNA.261-201ENST00000364631 102 ntBASIC3.21□□□□□ -1.9
CCDC87Q9NVE4 SNORA8-201ENST00000384574 139 ntBASIC3.21□□□□□ -1.9
CCDC87Q9NVE4 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC87Q9NVE4 UBBP3-201ENST00000445497 241 ntBASIC3.21□□□□□ -1.9
CCDC87Q9NVE4 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC87Q9NVE4 RNU6-504P-201ENST00000516568 104 ntBASIC3.21□□□□□ -1.9
CCDC87Q9NVE4 RNU6-1291P-201ENST00000516591 104 ntBASIC3.21□□□□□ -1.9
CCDC87Q9NVE4 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC87Q9NVE4 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC87Q9NVE4 RNU6-834P-201ENST00000362367 110 ntBASIC3.2□□□□□ -1.9
CCDC87Q9NVE4 RNA5SP493-201ENST00000364115 91 ntBASIC3.2□□□□□ -1.9
CCDC87Q9NVE4 Y_RNA.267-201ENST00000364679 109 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 134.8 ms