RNA–Protein interactions for RNA: ENST00000445497.1

UBBP3-201, Transcript of ubiquitin B pseudogene 3, humanhuman

BASIC

Gene UBBP3, Length 241 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBBP3-201ENST00000445497 CHIC1Q5VXU3 224 aa6.18□□□□□ -1.42
UBBP3-201ENST00000445497 AEBP2Q6ZN18 517 aaPredicted RBP6□□□□□ -1.45
UBBP3-201ENST00000445497 SLC24A1O60721 1099 aa5.76□□□□□ -1.49
UBBP3-201ENST00000445497 PHF23Q9BUL5 403 aaPredicted RBP5.4□□□□□ -1.54
UBBP3-201ENST00000445497 EHMT2Q96KQ7 1210 aa5.28□□□□□ -1.56
UBBP3-201ENST00000445497 DAXXQ9UER7 740 aaPredicted RBP5.28□□□□□ -1.56
UBBP3-201ENST00000445497 TTBK1Q5TCY1 1321 aaPredicted RBP5.26□□□□□ -1.57
UBBP3-201ENST00000445497 MYT1Q01538 1121 aa5.24□□□□□ -1.57
UBBP3-201ENST00000445497 AMER1Q5JTC6 1135 aaPredicted RBP5.21□□□□□ -1.58
UBBP3-201ENST00000445497 NCBP3Q53F19 620 aaKnown RBP5.18□□□□□ -1.58
UBBP3-201ENST00000445497 PLPPR3Q6T4P5 718 aa5.16□□□□□ -1.58
UBBP3-201ENST00000445497 SENP3Q9H4L4 574 aaPredicted RBP5.15□□□□□ -1.59
UBBP3-201ENST00000445497 PELP1Q8IZL8 1130 aaKnown RBP5.14□□□□□ -1.59
UBBP3-201ENST00000445497 RTN4Q9NQC3 1192 aaKnown RBP5.1□□□□□ -1.59
UBBP3-201ENST00000445497 ARXQ96QS3 562 aa5.05□□□□□ -1.6
UBBP3-201ENST00000445497 ERICH6Q7L0X2 663 aa5.04□□□□□ -1.6
UBBP3-201ENST00000445497 RANGAP1P46060 587 aaPredicted RBP4.97□□□□□ -1.61
UBBP3-201ENST00000445497 APLP2Q06481 763 aa4.95□□□□□ -1.62
UBBP3-201ENST00000445497 CSRNP3Q8WYN3 585 aa4.91□□□□□ -1.62
UBBP3-201ENST00000445497 KCNA4P22459 653 aa4.9□□□□□ -1.63
UBBP3-201ENST00000445497 HOMEZQ8IX15 550 aa4.87□□□□□ -1.63
UBBP3-201ENST00000445497 BCANQ96GW7 911 aa4.87□□□□□ -1.63
UBBP3-201ENST00000445497 TAOK2Q9UL54 1235 aa4.8□□□□□ -1.64
UBBP3-201ENST00000445497 PRKCSHP14314 528 aaPredicted RBP4.77□□□□□ -1.65
UBBP3-201ENST00000445497 SLC4A1APQ9BWU0 796 aaKnown RBP4.77□□□□□ -1.65
UBBP3-201ENST00000445497 TIMELESSQ9UNS1 1208 aa4.77□□□□□ -1.65
UBBP3-201ENST00000445497 TULP1O00294 542 aaPredicted RBP4.74□□□□□ -1.65
UBBP3-201ENST00000445497 ADRA2BP18089 450 aa4.73□□□□□ -1.65
UBBP3-201ENST00000445497 PLCB2Q00722 1185 aa4.71□□□□□ -1.66
UBBP3-201ENST00000445497 FOXD1Q16676 465 aa4.69□□□□□ -1.66
UBBP3-201ENST00000445497 TPRNQ4KMQ1 711 aa4.69□□□□□ -1.66
UBBP3-201ENST00000445497 PPP6R1Q9UPN7 881 aa4.67□□□□□ -1.66
UBBP3-201ENST00000445497 GTF3C3Q9Y5Q9 886 aa4.66□□□□□ -1.66
UBBP3-201ENST00000445497 EIF5BO60841 1220 aaKnown RBP4.65□□□□□ -1.67
UBBP3-201ENST00000445497 PODXL2Q9NZ53 605 aa4.65□□□□□ -1.67
UBBP3-201ENST00000445497 FBXO3Q9UK99 471 aa4.64□□□□□ -1.67
UBBP3-201ENST00000445497 DCAF8L2P0C7V8 631 aa4.63□□□□□ -1.67
UBBP3-201ENST00000445497 HAP1P54257 671 aaPredicted RBP4.62□□□□□ -1.67
UBBP3-201ENST00000445497 VSIG10Q8N0Z9 540 aa4.62□□□□□ -1.67
UBBP3-201ENST00000445497 NPM2Q86SE8 214 aaKnown RBP4.59□□□□□ -1.67
UBBP3-201ENST00000445497 TMEM132AQ24JP5 1023 aa4.56□□□□□ -1.68
UBBP3-201ENST00000445497 C14orf37Q86TY3 774 aa4.56□□□□□ -1.68
UBBP3-201ENST00000445497 PPP4R3CPQ6ZMV5 832 aa4.55□□□□□ -1.68
UBBP3-201ENST00000445497 KLHL34Q8N239 644 aa4.53□□□□□ -1.68
UBBP3-201ENST00000445497 PIAS4Q8N2W9 510 aaPredicted RBP4.51□□□□□ -1.69
UBBP3-201ENST00000445497 HMGB1P09429 215 aaKnown RBP4.48□□□□□ -1.69
UBBP3-201ENST00000445497 CDK11AQ9UQ88 783 aaPredicted RBP4.47□□□□□ -1.69
UBBP3-201ENST00000445497 FKBP8Q14318 412 aa4.44□□□□□ -1.7
UBBP3-201ENST00000445497 NPM3O75607 178 aaKnown RBP4.43□□□□□ -1.7
UBBP3-201ENST00000445497 SCAF1Q9H7N4 1312 aaKnown RBP4.42□□□□□ -1.7
UBBP3-201ENST00000445497 ZBTB22O15209 634 aa4.41□□□□□ -1.7
UBBP3-201ENST00000445497 NBR1Q14596 966 aa4.39□□□□□ -1.71
UBBP3-201ENST00000445497 CNKSR2Q8WXI2 1034 aa4.39□□□□□ -1.71
UBBP3-201ENST00000445497 CDK11BP21127 795 aaKnown RBP4.38□□□□□ -1.71
UBBP3-201ENST00000445497 TRIM26Q12899 539 aaPredicted RBP4.38□□□□□ -1.71
UBBP3-201ENST00000445497 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.37□□□□□ -1.71
UBBP3-201ENST00000445497 CCDC9Q9Y3X0 531 aaKnown RBP4.37□□□□□ -1.71
UBBP3-201ENST00000445497 KDM2AQ9Y2K7 1162 aa4.36□□□□□ -1.71
UBBP3-201ENST00000445497 HSP90B1P14625 803 aaKnown RBP4.35□□□□□ -1.71
UBBP3-201ENST00000445497 FOXD4L1Q9NU39 408 aa4.34□□□□□ -1.71
UBBP3-201ENST00000445497 SHROOM4Q9ULL8 1493 aa4.33□□□□□ -1.72
UBBP3-201ENST00000445497 SUPT5HO00267 1087 aaKnown RBP4.33□□□□□ -1.72
UBBP3-201ENST00000445497 ZBTB7CA1YPR0 619 aa4.3□□□□□ -1.72
UBBP3-201ENST00000445497 MSH5O43196 834 aa4.3□□□□□ -1.72
UBBP3-201ENST00000445497 UBTFP17480 764 aaKnown RBP4.3□□□□□ -1.72
UBBP3-201ENST00000445497 DNAJC5BQ9UF47 199 aa4.3□□□□□ -1.72
UBBP3-201ENST00000445497 PDIA4P13667 645 aaKnown RBP4.29□□□□□ -1.72
UBBP3-201ENST00000445497 HRCP23327 699 aa4.29□□□□□ -1.72
UBBP3-201ENST00000445497 BBXQ8WY36 941 aaPredicted RBP4.29□□□□□ -1.72
UBBP3-201ENST00000445497 FBLN2P98095 1184 aa4.28□□□□□ -1.72
UBBP3-201ENST00000445497 BRD2P25440 801 aaKnown RBP4.26□□□□□ -1.73
UBBP3-201ENST00000445497 UBE2Q2Q8WVN8 375 aa4.26□□□□□ -1.73
UBBP3-201ENST00000445497 PLEKHG5O94827 1062 aa4.25□□□□□ -1.73
UBBP3-201ENST00000445497 PUS7Q96PZ0 661 aaKnown RBP4.25□□□□□ -1.73
UBBP3-201ENST00000445497 LOC105371045A0A1W2PR82 267 aa4.24□□□□□ -1.73
UBBP3-201ENST00000445497 NEFLP07196 543 aa4.24□□□□□ -1.73
UBBP3-201ENST00000445497 PAXIP1Q6ZW49 1069 aaPredicted RBP4.24□□□□□ -1.73
UBBP3-201ENST00000445497 RNF216Q9NWF9 866 aaPredicted RBP4.24□□□□□ -1.73
UBBP3-201ENST00000445497 BCL11AQ9H165 835 aa4.23□□□□□ -1.73
UBBP3-201ENST00000445497 TAF7LQ5H9L4 462 aa4.22□□□□□ -1.73
UBBP3-201ENST00000445497 CFAP44Q96MT7 982 aa4.22□□□□□ -1.73
UBBP3-201ENST00000445497 CHMP4AQ9BY43 222 aa4.22□□□□□ -1.73
UBBP3-201ENST00000445497 ATXN8OSP0DMR3 200 aa4.19□□□□□ -1.74
UBBP3-201ENST00000445497 SPRYD3Q8NCJ5 442 aa4.19□□□□□ -1.74
UBBP3-201ENST00000445497 RSPH6AQ9H0K4 717 aa4.19□□□□□ -1.74
UBBP3-201ENST00000445497 DNAJC5Q9H3Z4 198 aa4.19□□□□□ -1.74
UBBP3-201ENST00000445497 BCCIPQ9P287 314 aaKnown RBP eCLIP4.19□□□□□ -1.74
UBBP3-201ENST00000445497 MAPK8IP2Q13387 824 aaPredicted RBP4.18□□□□□ -1.74
UBBP3-201ENST00000445497 ZNF326Q5BKZ1 582 aaKnown RBP4.18□□□□□ -1.74
UBBP3-201ENST00000445497 SAMD1Q6SPF0 538 aaPredicted RBP4.18□□□□□ -1.74
UBBP3-201ENST00000445497 ARID3AQ99856 593 aa4.18□□□□□ -1.74
UBBP3-201ENST00000445497 PDE4CQ08493 712 aa4.17□□□□□ -1.74
UBBP3-201ENST00000445497 TSHZ2Q9NRE2 1034 aa4.16□□□□□ -1.74
UBBP3-201ENST00000445497 IGSF3O75054 1194 aa4.14□□□□□ -1.75
UBBP3-201ENST00000445497 HOXD11P31277 338 aaPredicted RBP4.14□□□□□ -1.75
UBBP3-201ENST00000445497 POLR3GLQ9BT43 218 aa4.14□□□□□ -1.75
UBBP3-201ENST00000445497 ZMYND15Q9H091 742 aa4.14□□□□□ -1.75
UBBP3-201ENST00000445497 MYCNP04198 464 aaPredicted RBP4.13□□□□□ -1.75
UBBP3-201ENST00000445497 DMRT2Q9Y5R5 561 aa4.12□□□□□ -1.75
UBBP3-201ENST00000445497 NPM1P06748 294 aaKnown RBP eCLIP4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms