Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
SENP3Q9H4L4 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC6.86□□□□□ -1.31
SENP3Q9H4L4 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC6.86□□□□□ -1.31
SENP3Q9H4L4 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
SENP3Q9H4L4 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
SENP3Q9H4L4 5S_rRNA.1-201ENST00000364415 116 ntBASIC6.86□□□□□ -1.31
SENP3Q9H4L4 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
SENP3Q9H4L4 ENPP7P9-201ENST00000514456 627 ntBASIC6.86□□□□□ -1.31
SENP3Q9H4L4 SCARNA17.1-201ENST00000516211 143 ntBASIC6.86□□□□□ -1.31
SENP3Q9H4L4 SCARNA17.2-201ENST00000516334 143 ntBASIC6.86□□□□□ -1.31
SENP3Q9H4L4 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC6.86□□□□□ -1.31
SENP3Q9H4L4 SCARNA17.4-201ENST00000614296 143 ntBASIC6.86□□□□□ -1.31
SENP3Q9H4L4 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SENP3Q9H4L4 AC083899.1-201ENST00000454465 3819 ntBASIC6.86□□□□□ -1.31
SENP3Q9H4L4 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.85□□□□□ -1.31
SENP3Q9H4L4 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SENP3Q9H4L4 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
SENP3Q9H4L4 RNA5SP97-201ENST00000365006 84 ntBASIC6.85□□□□□ -1.31
SENP3Q9H4L4 MIR659-201ENST00000384963 97 ntBASIC6.85□□□□□ -1.31
SENP3Q9H4L4 AL034345.1-201ENST00000407768 123 ntBASIC6.85□□□□□ -1.31
SENP3Q9H4L4 MIR5739-201ENST00000619803 80 ntBASIC6.85□□□□□ -1.31
SENP3Q9H4L4 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
SENP3Q9H4L4 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC6.85□□□□□ -1.31
SENP3Q9H4L4 AL121839.2-201ENST00000565058 6943 ntBASIC6.85□□□□□ -1.31
SENP3Q9H4L4 AC005005.4-201ENST00000623789 16698 ntBASIC6.84□□□□□ -1.31
SENP3Q9H4L4 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC6.84□□□□□ -1.31
SENP3Q9H4L4 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SENP3Q9H4L4 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SENP3Q9H4L4 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.31
SENP3Q9H4L4 RNU6-628P-201ENST00000410675 107 ntBASIC6.84□□□□□ -1.31
SENP3Q9H4L4 APOA2-207ENST00000470459 416 ntTSL 5 BASIC6.84□□□□□ -1.31
SENP3Q9H4L4 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC6.84□□□□□ -1.31
SENP3Q9H4L4 SCARNA15.3-201ENST00000626315 122 ntBASIC6.84□□□□□ -1.31
SENP3Q9H4L4 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC6.84□□□□□ -1.31
SENP3Q9H4L4 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SENP3Q9H4L4 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SENP3Q9H4L4 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SENP3Q9H4L4 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC6.84□□□□□ -1.32
SENP3Q9H4L4 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.32
SENP3Q9H4L4 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
SENP3Q9H4L4 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SENP3Q9H4L4 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC6.83□□□□□ -1.32
SENP3Q9H4L4 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC6.83□□□□□ -1.32
SENP3Q9H4L4 AC121758.2-201ENST00000553271 193 ntBASIC6.83□□□□□ -1.32
SENP3Q9H4L4 DLEU2_3.1-201ENST00000620005 73 ntBASIC6.83□□□□□ -1.32
SENP3Q9H4L4 AC000095.2-202ENST00000637415 154 ntBASIC6.83□□□□□ -1.32
SENP3Q9H4L4 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.32
SENP3Q9H4L4 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SENP3Q9H4L4 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC6.83□□□□□ -1.32
SENP3Q9H4L4 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SENP3Q9H4L4 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC6.82□□□□□ -1.32
SENP3Q9H4L4 SNORD38B-201ENST00000384690 67 ntBASIC6.82□□□□□ -1.32
SENP3Q9H4L4 FO393413.1-201ENST00000402892 195 ntBASIC6.82□□□□□ -1.32
SENP3Q9H4L4 MIR5699-201ENST00000578903 90 ntBASIC6.82□□□□□ -1.32
SENP3Q9H4L4 SNORD38B-202ENST00000625943 69 ntBASIC6.82□□□□□ -1.32
SENP3Q9H4L4 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
SENP3Q9H4L4 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC6.82□□□□□ -1.32
SENP3Q9H4L4 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC6.82□□□□□ -1.32
SENP3Q9H4L4 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
SENP3Q9H4L4 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
SENP3Q9H4L4 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
SENP3Q9H4L4 RPS26P8-201ENST00000393490 348 ntBASIC6.81□□□□□ -1.32
SENP3Q9H4L4 COX6CP13-201ENST00000428703 226 ntBASIC6.81□□□□□ -1.32
SENP3Q9H4L4 RN7SL290P-201ENST00000578661 300 ntBASIC6.81□□□□□ -1.32
SENP3Q9H4L4 MIR6075-201ENST00000620782 95 ntBASIC6.81□□□□□ -1.32
SENP3Q9H4L4 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC6.81□□□□□ -1.32
SENP3Q9H4L4 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
SENP3Q9H4L4 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SENP3Q9H4L4 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC6.81□□□□□ -1.32
SENP3Q9H4L4 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
SENP3Q9H4L4 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
SENP3Q9H4L4 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
SENP3Q9H4L4 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC6.8□□□□□ -1.32
SENP3Q9H4L4 SPRR2C-201ENST00000290702 219 ntBASIC6.8□□□□□ -1.32
SENP3Q9H4L4 MIR218-1-201ENST00000384999 110 ntBASIC6.8□□□□□ -1.32
SENP3Q9H4L4 RNU6-752P-201ENST00000516376 102 ntBASIC6.8□□□□□ -1.32
SENP3Q9H4L4 MIR3944-201ENST00000581277 108 ntBASIC6.8□□□□□ -1.32
SENP3Q9H4L4 MIR548AD-201ENST00000584780 82 ntBASIC6.8□□□□□ -1.32
SENP3Q9H4L4 MIR4773-1-201ENST00000637203 78 ntBASIC6.8□□□□□ -1.32
SENP3Q9H4L4 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC6.8□□□□□ -1.32
SENP3Q9H4L4 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
SENP3Q9H4L4 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC6.79□□□□□ -1.32
SENP3Q9H4L4 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SENP3Q9H4L4 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SENP3Q9H4L4 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
SENP3Q9H4L4 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SENP3Q9H4L4 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
SENP3Q9H4L4 RNU1-33P-201ENST00000364249 162 ntBASIC6.79□□□□□ -1.32
SENP3Q9H4L4 RNU1-13P-201ENST00000384499 162 ntBASIC6.79□□□□□ -1.32
SENP3Q9H4L4 RNA5SP252-201ENST00000391131 119 ntBASIC6.79□□□□□ -1.32
SENP3Q9H4L4 RNA5SP397-201ENST00000391323 118 ntBASIC6.79□□□□□ -1.32
SENP3Q9H4L4 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC6.79□□□□□ -1.32
SENP3Q9H4L4 RNU6-274P-201ENST00000459566 107 ntBASIC6.79□□□□□ -1.32
SENP3Q9H4L4 RN7SL176P-201ENST00000580352 264 ntBASIC6.79□□□□□ -1.32
SENP3Q9H4L4 MIR3920-201ENST00000581751 86 ntBASIC6.79□□□□□ -1.32
SENP3Q9H4L4 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC6.79□□□□□ -1.32
SENP3Q9H4L4 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC6.79□□□□□ -1.32
SENP3Q9H4L4 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SENP3Q9H4L4 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
SENP3Q9H4L4 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC6.78□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms