Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AL161788.1-201ENST00000441805 169 ntBASIC2.41□□□□□ -2.02
HOXA4Q00056 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXA4Q00056 AC080013.2-201ENST00000460866 323 ntBASIC2.41□□□□□ -2.02
HOXA4Q00056 AC092185.1-201ENST00000491371 97 ntBASIC2.41□□□□□ -2.02
HOXA4Q00056 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.41□□□□□ -2.02
HOXA4Q00056 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.41□□□□□ -2.02
HOXA4Q00056 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.41□□□□□ -2.02
HOXA4Q00056 AL365265.1-201ENST00000621045 234 ntBASIC2.41□□□□□ -2.02
HOXA4Q00056 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
HOXA4Q00056 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXA4Q00056 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.4□□□□□ -2.02
HOXA4Q00056 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.4□□□□□ -2.02
HOXA4Q00056 Y_RNA.180-201ENST00000363867 113 ntBASIC2.4□□□□□ -2.03
HOXA4Q00056 RNU6-743P-201ENST00000364151 106 ntBASIC2.4□□□□□ -2.03
HOXA4Q00056 Y_RNA.308-201ENST00000365043 101 ntBASIC2.4□□□□□ -2.03
HOXA4Q00056 RNU6-546P-201ENST00000383991 107 ntBASIC2.4□□□□□ -2.03
HOXA4Q00056 RNU6-418P-201ENST00000384035 107 ntBASIC2.4□□□□□ -2.03
HOXA4Q00056 RNU6-975P-201ENST00000384296 105 ntBASIC2.4□□□□□ -2.03
HOXA4Q00056 RNU6-763P-201ENST00000390865 106 ntBASIC2.4□□□□□ -2.03
HOXA4Q00056 RNU6-220P-201ENST00000390919 107 ntBASIC2.4□□□□□ -2.03
HOXA4Q00056 AL355796.1-201ENST00000406706 323 ntBASIC2.4□□□□□ -2.03
HOXA4Q00056 RN7SKP51-201ENST00000410781 304 ntBASIC2.4□□□□□ -2.03
HOXA4Q00056 RPS29P6-201ENST00000438196 145 ntBASIC2.4□□□□□ -2.03
HOXA4Q00056 RNU7-120P-201ENST00000459334 63 ntBASIC2.4□□□□□ -2.03
HOXA4Q00056 RN7SKP43-201ENST00000516173 320 ntBASIC2.4□□□□□ -2.03
HOXA4Q00056 AC087441.2-201ENST00000529141 262 ntBASIC2.4□□□□□ -2.03
HOXA4Q00056 Z83818.1-201ENST00000603584 150 ntBASIC2.4□□□□□ -2.03
HOXA4Q00056 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.4□□□□□ -2.03
HOXA4Q00056 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.4□□□□□ -2.03
HOXA4Q00056 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
HOXA4Q00056 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.4□□□□□ -2.03
HOXA4Q00056 AC008264.2-201ENST00000610193 3731 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
HOXA4Q00056 AC068700.1-201ENST00000565862 3754 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 RNU6-682P-201ENST00000363843 106 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 RNU6-1048P-201ENST00000364054 107 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 RNU1-112P-201ENST00000364401 164 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 Y_RNA.361-201ENST00000365515 120 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 MIR95-201ENST00000385072 81 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 SNORA26.5-201ENST00000391215 123 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 RNU6-918P-201ENST00000391219 106 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 RNU6-57P-201ENST00000411348 103 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 AL139281.1-201ENST00000422120 335 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 OOSP1P1-201ENST00000423265 274 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 TRIAP1P1-201ENST00000427062 225 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 CKS1BP2-201ENST00000497342 240 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 HMGB3P3-201ENST00000510526 400 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 RNU6-861P-201ENST00000516745 106 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 AC136628.3-201ENST00000521868 290 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXA4Q00056 PRELID2P1-201ENST00000552837 301 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXA4Q00056 MIR4308-201ENST00000580634 81 ntBASIC2.39□□□□□ -2.03
HOXA4Q00056 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXA4Q00056 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
HOXA4Q00056 Z82195.2-201ENST00000612348 18351 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.38□□□□□ -2.03
HOXA4Q00056 AC134026.1-201ENST00000623249 2239 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
HOXA4Q00056 Z82209.1-201ENST00000422141 2135 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 RNU6-653P-201ENST00000363074 106 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 Y_RNA.124-201ENST00000363339 93 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 RNU6-1020P-201ENST00000363684 107 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 Y_RNA.172-201ENST00000363765 102 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 RNU6-461P-201ENST00000364195 107 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 Y_RNA.304-201ENST00000365011 112 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 SNORA9.2-201ENST00000365361 133 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 RNU6-438P-201ENST00000365561 103 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 SNORA20B-201ENST00000384220 132 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 SNORA19-201ENST00000384737 128 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.38□□□□□ -2.03
HOXA4Q00056 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXA4Q00056 CYP2C59P-201ENST00000457790 269 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 AC016925.1-201ENST00000458303 298 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 SNORD65B-201ENST00000459126 73 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 AP001486.1-201ENST00000463339 476 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 AC003982.1-202ENST00000469928 248 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 RNU6-406P-201ENST00000516470 107 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 AC022616.8-201ENST00000533569 253 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 AC009127.3-201ENST00000570531 403 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 snoZ196.1-201ENST00000625269 89 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.38□□□□□ -2.03
HOXA4Q00056 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.38□□□□□ -2.03
HOXA4Q00056 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.38□□□□□ -2.03
HOXA4Q00056 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
HOXA4Q00056 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.38□□□□□ -2.03
HOXA4Q00056 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.38□□□□□ -2.03
HOXA4Q00056 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.37□□□□□ -2.03
HOXA4Q00056 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.37□□□□□ -2.03
HOXA4Q00056 SNORA80A-201ENST00000363922 136 ntBASIC2.37□□□□□ -2.03
HOXA4Q00056 Y_RNA.262-201ENST00000364641 102 ntBASIC2.37□□□□□ -2.03
HOXA4Q00056 MIR548M-201ENST00000408260 86 ntBASIC2.37□□□□□ -2.03
HOXA4Q00056 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.37□□□□□ -2.03
HOXA4Q00056 RNU6-855P-201ENST00000410395 104 ntBASIC2.37□□□□□ -2.03
HOXA4Q00056 RNU2-48P-201ENST00000410694 191 ntBASIC2.37□□□□□ -2.03
HOXA4Q00056 AL451074.5-201ENST00000415894 435 ntBASIC2.37□□□□□ -2.03
HOXA4Q00056 AL513477.1-202ENST00000417061 214 ntBASIC2.37□□□□□ -2.03
HOXA4Q00056 AL121890.1-201ENST00000435457 205 ntBASIC2.37□□□□□ -2.03
HOXA4Q00056 RNU6-221P-201ENST00000459541 99 ntBASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms