RNA–Protein interactions for RNA: ENST00000497342.1

CKS1BP2-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 2, humanhuman

BASIC

Gene CKS1BP2, Length 240 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP2-201ENST00000497342 CHIC1Q5VXU3 224 aa8.43□□□□□ -1.06
CKS1BP2-201ENST00000497342 AEBP2Q6ZN18 517 aaPredicted RBP8.17□□□□□ -1.1
CKS1BP2-201ENST00000497342 PHF23Q9BUL5 403 aaPredicted RBP7.44□□□□□ -1.22
CKS1BP2-201ENST00000497342 PLPPR3Q6T4P5 718 aa7□□□□□ -1.29
CKS1BP2-201ENST00000497342 SENP3Q9H4L4 574 aaPredicted RBP6.88□□□□□ -1.31
CKS1BP2-201ENST00000497342 KCNA4P22459 653 aa6.48□□□□□ -1.37
CKS1BP2-201ENST00000497342 ADRA2BP18089 450 aa6.45□□□□□ -1.38
CKS1BP2-201ENST00000497342 EHMT2Q96KQ7 1210 aa6.4□□□□□ -1.38
CKS1BP2-201ENST00000497342 PPP6R1Q9UPN7 881 aa6.37□□□□□ -1.39
CKS1BP2-201ENST00000497342 CSRNP3Q8WYN3 585 aa6.32□□□□□ -1.4
CKS1BP2-201ENST00000497342 FOXD1Q16676 465 aa6.3□□□□□ -1.4
CKS1BP2-201ENST00000497342 SLC4A1APQ9BWU0 796 aaKnown RBP6.23□□□□□ -1.41
CKS1BP2-201ENST00000497342 PPP4R3CPQ6ZMV5 832 aa6.18□□□□□ -1.42
CKS1BP2-201ENST00000497342 NCBP3Q53F19 620 aaKnown RBP6.15□□□□□ -1.42
CKS1BP2-201ENST00000497342 DNAJC5BQ9UF47 199 aa6.14□□□□□ -1.43
CKS1BP2-201ENST00000497342 DNAJC5Q9H3Z4 198 aa6.13□□□□□ -1.43
CKS1BP2-201ENST00000497342 NPM3O75607 178 aaKnown RBP6.07□□□□□ -1.44
CKS1BP2-201ENST00000497342 ZBTB22O15209 634 aa6.02□□□□□ -1.45
CKS1BP2-201ENST00000497342 SLC24A1O60721 1099 aa5.97□□□□□ -1.45
CKS1BP2-201ENST00000497342 PIAS4Q8N2W9 510 aaPredicted RBP5.97□□□□□ -1.45
CKS1BP2-201ENST00000497342 CNKSR2Q8WXI2 1034 aa5.97□□□□□ -1.45
CKS1BP2-201ENST00000497342 AMER1Q5JTC6 1135 aaPredicted RBP5.92□□□□□ -1.46
CKS1BP2-201ENST00000497342 FOXD4L1Q9NU39 408 aa5.89□□□□□ -1.47
CKS1BP2-201ENST00000497342 SCAF1Q9H7N4 1312 aaKnown RBP5.86□□□□□ -1.47
CKS1BP2-201ENST00000497342 RTN4Q9NQC3 1192 aaKnown RBP5.84□□□□□ -1.47
CKS1BP2-201ENST00000497342 RNF216Q9NWF9 866 aaPredicted RBP5.78□□□□□ -1.48
CKS1BP2-201ENST00000497342 ATXN8OSP0DMR3 200 aa5.76□□□□□ -1.49
CKS1BP2-201ENST00000497342 ABCC9O60706 1549 aa5.71□□□□□ -1.5
CKS1BP2-201ENST00000497342 HOXD11P31277 338 aaPredicted RBP5.69□□□□□ -1.5
CKS1BP2-201ENST00000497342 MSH5O43196 834 aa5.68□□□□□ -1.5
CKS1BP2-201ENST00000497342 SLC4A2P04920 1241 aa5.66□□□□□ -1.5
CKS1BP2-201ENST00000497342 MYCNP04198 464 aaPredicted RBP5.62□□□□□ -1.51
CKS1BP2-201ENST00000497342 MAPK8IP2Q13387 824 aaPredicted RBP5.61□□□□□ -1.51
CKS1BP2-201ENST00000497342 DMRT2Q9Y5R5 561 aa5.59□□□□□ -1.51
CKS1BP2-201ENST00000497342 FKBP8Q14318 412 aa5.58□□□□□ -1.52
CKS1BP2-201ENST00000497342 TRIM41Q8WV44 630 aa5.49□□□□□ -1.53
CKS1BP2-201ENST00000497342 PROM2Q8N271 834 aa5.43□□□□□ -1.54
CKS1BP2-201ENST00000497342 PLCB2Q00722 1185 aa5.42□□□□□ -1.54
CKS1BP2-201ENST00000497342 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.38□□□□□ -1.55
CKS1BP2-201ENST00000497342 HNRNPUL2Q1KMD3 747 aaKnown RBP5.38□□□□□ -1.55
CKS1BP2-201ENST00000497342 ATF5Q9Y2D1 282 aaPredicted RBP5.38□□□□□ -1.55
CKS1BP2-201ENST00000497342 SAMD1Q6SPF0 538 aaPredicted RBP5.37□□□□□ -1.55
CKS1BP2-201ENST00000497342 FBXO3Q9UK99 471 aa5.37□□□□□ -1.55
CKS1BP2-201ENST00000497342 ILDR1Q86SU0 546 aaPredicted RBP5.36□□□□□ -1.55
CKS1BP2-201ENST00000497342 NISCHQ9Y2I1 1504 aa5.35□□□□□ -1.55
CKS1BP2-201ENST00000497342 VSIG10Q8N0Z9 540 aa5.31□□□□□ -1.56
CKS1BP2-201ENST00000497342 BCANQ96GW7 911 aa5.31□□□□□ -1.56
CKS1BP2-201ENST00000497342 U3KPZ7 1027 aaPredicted RBP5.29□□□□□ -1.56
CKS1BP2-201ENST00000497342 VASPP50552 380 aaPredicted RBP5.26□□□□□ -1.57
CKS1BP2-201ENST00000497342 ZNF219Q9P2Y4 722 aaPredicted RBP5.25□□□□□ -1.57
CKS1BP2-201ENST00000497342 TAOK2Q9UL54 1235 aa5.25□□□□□ -1.57
CKS1BP2-201ENST00000497342 PKD2Q13563 968 aa5.24□□□□□ -1.57
CKS1BP2-201ENST00000497342 PABPN1Q86U42 306 aaKnown RBP eCLIP5.24□□□□□ -1.57
CKS1BP2-201ENST00000497342 SPDYE4A6NLX3 237 aa5.23□□□□□ -1.57
CKS1BP2-201ENST00000497342 IFNLR1Q8IU57 520 aaPredicted RBP5.23□□□□□ -1.57
CKS1BP2-201ENST00000497342 CUX2O14529 1486 aa5.23□□□□□ -1.57
CKS1BP2-201ENST00000497342 CECR2Q9BXF3 1484 aa5.23□□□□□ -1.57
CKS1BP2-201ENST00000497342 APLP2Q06481 763 aa5.22□□□□□ -1.57
CKS1BP2-201ENST00000497342 MKRN4PQ13434 485 aaPredicted RBP5.22□□□□□ -1.57
CKS1BP2-201ENST00000497342 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.21□□□□□ -1.58
CKS1BP2-201ENST00000497342 HAP1P54257 671 aaPredicted RBP5.19□□□□□ -1.58
CKS1BP2-201ENST00000497342 BBXQ8WY36 941 aaPredicted RBP5.19□□□□□ -1.58
CKS1BP2-201ENST00000497342 KDM2AQ9Y2K7 1162 aa5.16□□□□□ -1.58
CKS1BP2-201ENST00000497342 PRKCSHP14314 528 aaPredicted RBP5.14□□□□□ -1.59
CKS1BP2-201ENST00000497342 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.11□□□□□ -1.59
CKS1BP2-201ENST00000497342 CC2D2AQ9P2K1 1620 aa5.11□□□□□ -1.59
CKS1BP2-201ENST00000497342 NPM1P06748 294 aaKnown RBP eCLIP5.1□□□□□ -1.59
CKS1BP2-201ENST00000497342 FBLN2P98095 1184 aa5.1□□□□□ -1.59
CKS1BP2-201ENST00000497342 RB1CC1Q8TDY2 1594 aa5.09□□□□□ -1.59
CKS1BP2-201ENST00000497342 SPOCK2Q92563 424 aa5.08□□□□□ -1.6
CKS1BP2-201ENST00000497342 TPRNQ4KMQ1 711 aa5.07□□□□□ -1.6
CKS1BP2-201ENST00000497342 STAG3Q9UJ98 1225 aa5.05□□□□□ -1.6
CKS1BP2-201ENST00000497342 SOCS7O14512 581 aa5.04□□□□□ -1.6
CKS1BP2-201ENST00000497342 ZBTB12Q9Y330 459 aaPredicted RBP5.04□□□□□ -1.6
CKS1BP2-201ENST00000497342 DCAF8L1A6NGE4 600 aa5.03□□□□□ -1.6
CKS1BP2-201ENST00000497342 ECM2O94769 699 aaPredicted RBP5.03□□□□□ -1.6
CKS1BP2-201ENST00000497342 PAXIP1Q6ZW49 1069 aaPredicted RBP5.03□□□□□ -1.6
CKS1BP2-201ENST00000497342 SPRYD3Q8NCJ5 442 aa5.03□□□□□ -1.6
CKS1BP2-201ENST00000497342 ERICH6Q7L0X2 663 aa5.02□□□□□ -1.61
CKS1BP2-201ENST00000497342 BICRAQ9NZM4 1560 aa5.01□□□□□ -1.61
CKS1BP2-201ENST00000497342 RGL2O15211 777 aa5.01□□□□□ -1.61
CKS1BP2-201ENST00000497342 DCAF8L2P0C7V8 631 aa5□□□□□ -1.61
CKS1BP2-201ENST00000497342 TRHP20396 242 aaPredicted RBP4.99□□□□□ -1.61
CKS1BP2-201ENST00000497342 HS6ST3Q8IZP7 471 aa4.99□□□□□ -1.61
CKS1BP2-201ENST00000497342 TSHZ2Q9NRE2 1034 aa4.99□□□□□ -1.61
CKS1BP2-201ENST00000497342 SSUH2Q9Y2M2 353 aa4.99□□□□□ -1.61
CKS1BP2-201ENST00000497342 POLA2Q14181 598 aa4.98□□□□□ -1.61
CKS1BP2-201ENST00000497342 LMTK3Q96Q04 1460 aa4.97□□□□□ -1.61
CKS1BP2-201ENST00000497342 ERCC6Q03468 1493 aa4.96□□□□□ -1.62
CKS1BP2-201ENST00000497342 CFAP44Q96MT7 982 aa4.96□□□□□ -1.62
CKS1BP2-201ENST00000497342 ARXQ96QS3 562 aa4.96□□□□□ -1.62
CKS1BP2-201ENST00000497342 CCDC180Q9P1Z9 1646 aa4.96□□□□□ -1.62
CKS1BP2-201ENST00000497342 SPDYE2BA6NHP3 402 aa4.94□□□□□ -1.62
CKS1BP2-201ENST00000497342 SPDYE6P0CI01 402 aa4.94□□□□□ -1.62
CKS1BP2-201ENST00000497342 SPDYE2Q495Y8 402 aa4.94□□□□□ -1.62
CKS1BP2-201ENST00000497342 ILDR2Q71H61 639 aa4.94□□□□□ -1.62
CKS1BP2-201ENST00000497342 SPINK5Q9NQ38 1064 aaPredicted RBP4.94□□□□□ -1.62
CKS1BP2-201ENST00000497342 TIMELESSQ9UNS1 1208 aa4.94□□□□□ -1.62
CKS1BP2-201ENST00000497342 UNC13AQ9UPW8 1703 aa4.94□□□□□ -1.62
CKS1BP2-201ENST00000497342 EIF4G1Q04637 1599 aaKnown RBP4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms