Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 RNU6-197P-201ENST00000516680 100 ntBASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 SNORA70.19-201ENST00000516717 90 ntBASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 AC090142.3-201ENST00000519012 385 ntBASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 AC090049.2-201ENST00000550377 109 ntBASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 MIR2681-201ENST00000581814 105 ntBASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 RNU4-35P-201ENST00000362588 141 ntBASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 RNA5SP139-201ENST00000364340 117 ntBASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 RNU6-460P-201ENST00000391158 108 ntBASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 RNU6-126P-201ENST00000516685 103 ntBASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 MIR2276-201ENST00000516886 89 ntBASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 RNU6-586P-201ENST00000517265 104 ntBASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 AC025647.1-201ENST00000517879 253 ntBASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 IGKV2-26-201ENST00000518305 343 ntBASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 SNORA51-201ENST00000606420 132 ntBASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 MIR7851-201ENST00000610611 160 ntBASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 MIR7157-201ENST00000635801 60 ntBASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 AC007256.1-201ENST00000392253 2765 ntBASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.27□□□□□ -1.89
UBE3DQ7Z6J8 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 AC058791.1-201ENST00000608412 3198 ntBASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 AL356292.1-201ENST00000283110 373 ntBASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 MIR30E-201ENST00000362104 92 ntBASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 RNU4-41P-201ENST00000364426 143 ntBASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 RNU6-117P-201ENST00000365415 107 ntBASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 Y_RNA.432-201ENST00000384087 111 ntBASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 SNORA72-201ENST00000384339 132 ntBASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 MIR218-2-201ENST00000385006 110 ntBASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 RNU6-588P-201ENST00000410281 105 ntBASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 RPS29P4-201ENST00000414733 161 ntBASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 SNRPGP8-201ENST00000454064 226 ntBASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 AC093663.1-201ENST00000497190 394 ntBASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 RNU2-56P-201ENST00000516826 190 ntBASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 Y_RNA.712-201ENST00000517011 92 ntBASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 RNU6-711P-201ENST00000517255 106 ntBASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 Y_RNA.757-201ENST00000578934 114 ntBASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 RNVU1-4-201ENST00000612985 164 ntBASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 AC034229.5-201ENST00000624258 185 ntBASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
UBE3DQ7Z6J8 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 AL355596.1-201ENST00000565399 3996 ntBASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 RNU4-13P-201ENST00000364019 141 ntBASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 RNU6-944P-201ENST00000364023 107 ntBASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 SNORA25.7-201ENST00000364375 127 ntBASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 SNORA62.3-201ENST00000365110 153 ntBASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 Y_RNA.584-201ENST00000391090 114 ntBASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 RN7SKP111-201ENST00000410349 271 ntBASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 AC126124.2-201ENST00000413542 321 ntBASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 AL353705.1-201ENST00000433468 480 ntBASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 AC110768.1-201ENST00000509222 400 ntBASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 ATP5EP1-201ENST00000510257 156 ntBASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 RNA5SP153-201ENST00000516498 76 ntBASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 AC107934.2-201ENST00000518653 310 ntBASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 AC093331.1-201ENST00000521474 169 ntBASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 MIR7153-201ENST00000637758 57 ntBASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
UBE3DQ7Z6J8 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 RNU6-915P-201ENST00000364943 103 ntBASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 RNU6-1240P-201ENST00000365155 104 ntBASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 RNU6-1080P-201ENST00000383982 107 ntBASIC3.24□□□□□ -1.89
UBE3DQ7Z6J8 SNORD14D-201ENST00000384390 87 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 185.2 ms