RNA–Protein interactions for RNA: ENST00000317402.11

GEN1-201, Transcript of GEN1, Holliday junction 5' flap endonuclease, humanhuman

APPRIS P1 TSL 2 BASIC

Gene GEN1, Length 9,854 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GEN1-201ENST00000317402 NISCHQ9Y2I1 1504 aa6.72□□□□□ -1.33
GEN1-201ENST00000317402 SHROOM4Q9ULL8 1493 aa6.64□□□□□ -1.35
GEN1-201ENST00000317402 EHMT2Q96KQ7 1210 aa6.55□□□□□ -1.36
GEN1-201ENST00000317402 PPARGC1BQ86YN6 1023 aaKnown RBP6.52□□□□□ -1.37
GEN1-201ENST00000317402 DCAF8L2P0C7V8 631 aa6.51□□□□□ -1.37
GEN1-201ENST00000317402 SUPT5HO00267 1087 aaKnown RBP6.43□□□□□ -1.38
GEN1-201ENST00000317402 LOC105371045A0A1W2PR82 267 aa6.27□□□□□ -1.41
GEN1-201ENST00000317402 TTBK1Q5TCY1 1321 aaPredicted RBP6.24□□□□□ -1.41
GEN1-201ENST00000317402 MYO15BQ96JP2 1530 aa6.23□□□□□ -1.41
GEN1-201ENST00000317402 CCDC180Q9P1Z9 1646 aa6.2□□□□□ -1.42
GEN1-201ENST00000317402 PCGF6Q9BYE7 350 aa6.18□□□□□ -1.42
GEN1-201ENST00000317402 FAM9AQ8IZU1 332 aaPredicted RBP6.13□□□□□ -1.43
GEN1-201ENST00000317402 MYT1Q01538 1121 aa6.13□□□□□ -1.43
GEN1-201ENST00000317402 PELP1Q8IZL8 1130 aaKnown RBP6.09□□□□□ -1.43
GEN1-201ENST00000317402 KAT6BQ8WYB5 2073 aa6.03□□□□□ -1.44
GEN1-201ENST00000317402 CHIC1Q5VXU3 224 aa5.97□□□□□ -1.45
GEN1-201ENST00000317402 RANGAP1P46060 587 aaPredicted RBP5.93□□□□□ -1.46
GEN1-201ENST00000317402 HRCP23327 699 aa5.9□□□□□ -1.46
GEN1-201ENST00000317402 SCAF1Q9H7N4 1312 aaKnown RBP5.89□□□□□ -1.47
GEN1-201ENST00000317402 DCAF1Q9Y4B6 1507 aa5.88□□□□□ -1.47
GEN1-201ENST00000317402 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.84□□□□□ -1.47
GEN1-201ENST00000317402 YTHDC1Q96MU7 727 aaKnown RBP5.82□□□□□ -1.48
GEN1-201ENST00000317402 PABPN1Q86U42 306 aaKnown RBP eCLIP5.77□□□□□ -1.49
GEN1-201ENST00000317402 SENP3-EIF4A1A0A087X0R7 540 aa5.75□□□□□ -1.49
GEN1-201ENST00000317402 NEUROD1Q13562 356 aa5.72□□□□□ -1.49
GEN1-201ENST00000317402 ZCCHC6Q5VYS8 1495 aaKnown RBP5.72□□□□□ -1.49
GEN1-201ENST00000317402 ABCC9O60706 1549 aa5.69□□□□□ -1.5
GEN1-201ENST00000317402 ERICH6Q7L0X2 663 aa5.67□□□□□ -1.5
GEN1-201ENST00000317402 KCNH8Q96L42 1107 aa5.65□□□□□ -1.5
GEN1-201ENST00000317402 HIRIP3Q9BW71 556 aaPredicted RBP5.64□□□□□ -1.51
GEN1-201ENST00000317402 NACADO15069 1562 aa5.61□□□□□ -1.51
GEN1-201ENST00000317402 GTF3C3Q9Y5Q9 886 aa5.61□□□□□ -1.51
GEN1-201ENST00000317402 HNRNPUL2Q1KMD3 747 aaKnown RBP5.6□□□□□ -1.51
GEN1-201ENST00000317402 BCANQ96GW7 911 aa5.59□□□□□ -1.52
GEN1-201ENST00000317402 CNGB1Q14028 1251 aaPredicted RBP5.58□□□□□ -1.52
GEN1-201ENST00000317402 TRIM41Q8WV44 630 aa5.58□□□□□ -1.52
GEN1-201ENST00000317402 ITGAEP38570 1179 aa5.54□□□□□ -1.52
GEN1-201ENST00000317402 RUSC2Q8N2Y8 1516 aa5.53□□□□□ -1.52
GEN1-201ENST00000317402 MIER1Q8N108 512 aa5.53□□□□□ -1.52
GEN1-201ENST00000317402 TRIM26Q12899 539 aaPredicted RBP5.52□□□□□ -1.53
GEN1-201ENST00000317402 CCER1Q8TC90 406 aaPredicted RBP5.51□□□□□ -1.53
GEN1-201ENST00000317402 SCRIBQ14160 1630 aa5.51□□□□□ -1.53
GEN1-201ENST00000317402 CECR2Q9BXF3 1484 aa5.51□□□□□ -1.53
GEN1-201ENST00000317402 ARID3CA6NKF2 412 aa5.51□□□□□ -1.53
GEN1-201ENST00000317402 GON4LQ3T8J9 2241 aa5.5□□□□□ -1.53
GEN1-201ENST00000317402 ATP1B4Q9UN42 357 aaPredicted RBP5.49□□□□□ -1.53
GEN1-201ENST00000317402 DNAJC5BQ9UF47 199 aa5.48□□□□□ -1.53
GEN1-201ENST00000317402 IRX6P78412 446 aaPredicted RBP5.48□□□□□ -1.53
GEN1-201ENST00000317402 P3H3Q8IVL6 736 aa5.48□□□□□ -1.53
GEN1-201ENST00000317402 RB1CC1Q8TDY2 1594 aa5.47□□□□□ -1.53
GEN1-201ENST00000317402 CENPBP07199 599 aaPredicted RBP5.46□□□□□ -1.54
GEN1-201ENST00000317402 BAZ1BQ9UIG0 1483 aaKnown RBP5.44□□□□□ -1.54
GEN1-201ENST00000317402 SOGA1O94964 1423 aa5.44□□□□□ -1.54
GEN1-201ENST00000317402 UBTFP17480 764 aaKnown RBP5.43□□□□□ -1.54
GEN1-201ENST00000317402 ACIN1Q9UKV3 1341 aaKnown RBP5.42□□□□□ -1.54
GEN1-201ENST00000317402 MYO10Q9HD67 2058 aa5.42□□□□□ -1.54
GEN1-201ENST00000317402 DIEXFQ68CQ4 756 aaKnown RBP5.42□□□□□ -1.54
GEN1-201ENST00000317402 ABCC8Q09428 1581 aa5.41□□□□□ -1.54
GEN1-201ENST00000317402 SLC24A1O60721 1099 aa5.41□□□□□ -1.54
GEN1-201ENST00000317402 C11orf95C9JLR9 678 aaPredicted RBP5.4□□□□□ -1.55
GEN1-201ENST00000317402 SENP3Q9H4L4 574 aaPredicted RBP5.4□□□□□ -1.55
GEN1-201ENST00000317402 RSF1Q96T23 1441 aaPredicted RBP5.38□□□□□ -1.55
GEN1-201ENST00000317402 KANK4Q5T7N3 995 aaPredicted RBP5.38□□□□□ -1.55
GEN1-201ENST00000317402 SKAP1Q86WV1 359 aa5.37□□□□□ -1.55
GEN1-201ENST00000317402 SIN3AQ96ST3 1273 aa5.36□□□□□ -1.55
GEN1-201ENST00000317402 CCDC88BA6NC98 1476 aa5.36□□□□□ -1.55
GEN1-201ENST00000317402 BAZ1AQ9NRL2 1556 aaPredicted RBP5.34□□□□□ -1.55
GEN1-201ENST00000317402 SMARCA2P51531 1590 aa5.34□□□□□ -1.55
GEN1-201ENST00000317402 MROH2BQ7Z745 1585 aa5.32□□□□□ -1.56
GEN1-201ENST00000317402 GOLGA4Q13439 2230 aaKnown RBP5.32□□□□□ -1.56
GEN1-201ENST00000317402 CCDC184Q52MB2 194 aa5.31□□□□□ -1.56
GEN1-201ENST00000317402 TRIM52Q96A61 297 aa5.31□□□□□ -1.56
GEN1-201ENST00000317402 PRDM2Q13029 1718 aa5.29□□□□□ -1.56
GEN1-201ENST00000317402 CROCCQ5TZA2 2017 aa5.29□□□□□ -1.56
GEN1-201ENST00000317402 FOXD1Q16676 465 aa5.28□□□□□ -1.56
GEN1-201ENST00000317402 WIZO95785 1651 aa5.28□□□□□ -1.56
GEN1-201ENST00000317402 BCL11AQ9H165 835 aa5.28□□□□□ -1.56
GEN1-201ENST00000317402 PEG3Q9GZU2 1588 aa5.27□□□□□ -1.57
GEN1-201ENST00000317402 CSRNP3Q8WYN3 585 aa5.27□□□□□ -1.57
GEN1-201ENST00000317402 UNC13AQ9UPW8 1703 aa5.27□□□□□ -1.57
GEN1-201ENST00000317402 MYH10P35580 1976 aa5.27□□□□□ -1.57
GEN1-201ENST00000317402 EEA1Q15075 1411 aa5.27□□□□□ -1.57
GEN1-201ENST00000317402 MYH9P35579 1960 aaKnown RBP5.26□□□□□ -1.57
GEN1-201ENST00000317402 DDX10Q13206 875 aaKnown RBP5.25□□□□□ -1.57
GEN1-201ENST00000317402 MSH5O43196 834 aa5.25□□□□□ -1.57
GEN1-201ENST00000317402 TSHZ2Q9NRE2 1034 aa5.25□□□□□ -1.57
GEN1-201ENST00000317402 SUPT16HQ9Y5B9 1047 aaKnown RBP5.25□□□□□ -1.57
GEN1-201ENST00000317402 MYO9BQ13459 2157 aa5.23□□□□□ -1.57
GEN1-201ENST00000317402 ZNF316A6NFI3 1004 aaPredicted RBP5.23□□□□□ -1.57
GEN1-201ENST00000317402 EIF5BO60841 1220 aaKnown RBP5.22□□□□□ -1.57
GEN1-201ENST00000317402 GLIPR1L2Q4G1C9 344 aa5.22□□□□□ -1.57
GEN1-201ENST00000317402 PRKCSHP14314 528 aaPredicted RBP5.22□□□□□ -1.57
GEN1-201ENST00000317402 SALL2Q9Y467 1007 aaPredicted RBP5.22□□□□□ -1.57
GEN1-201ENST00000317402 TOP2AP11388 1531 aaKnown RBP5.22□□□□□ -1.57
GEN1-201ENST00000317402 ZEB1P37275 1124 aaPredicted RBP5.21□□□□□ -1.58
GEN1-201ENST00000317402 SMARCA4P51532 1647 aa5.21□□□□□ -1.58
GEN1-201ENST00000317402 FKBP8Q14318 412 aa5.21□□□□□ -1.58
GEN1-201ENST00000317402 POLR3GLQ9BT43 218 aa5.21□□□□□ -1.58
GEN1-201ENST00000317402 CHIC2Q9UKJ5 165 aa5.2□□□□□ -1.58
GEN1-201ENST00000317402 FAM50AQ14320 339 aaKnown RBP5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms