Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 POU5F1P3-201ENST00000428824 1078 ntBASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 AL353708.3-201ENST00000610272 989 ntBASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
HIF3AQ9Y2N7 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.33
HIF3AQ9Y2N7 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
HIF3AQ9Y2N7 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.08■□□□□ 0.33
HIF3AQ9Y2N7 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HIF3AQ9Y2N7 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.08■□□□□ 0.33
HIF3AQ9Y2N7 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HIF3AQ9Y2N7 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
HIF3AQ9Y2N7 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.08■□□□□ 0.33
HIF3AQ9Y2N7 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HIF3AQ9Y2N7 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HIF3AQ9Y2N7 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.08■□□□□ 0.33
HIF3AQ9Y2N7 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.08■□□□□ 0.33
HIF3AQ9Y2N7 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 AC131212.4-201ENST00000623606 975 ntBASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HIF3AQ9Y2N7 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 WIZP1-201ENST00000531444 2299 ntBASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 AC004980.1-204ENST00000429707 299 ntBASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 AC128676.1-201ENST00000454392 318 ntBASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 CD99P1-205ENST00000527459 561 ntBASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms