Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA2Q9Y261 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 BAALC-201ENST00000297574 801 ntTSL 3 BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
FOXA2Q9Y261 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 AL353807.1-201ENST00000427475 662 ntBASIC15.3■□□□□ 0.04
FOXA2Q9Y261 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 C1QL1P1-201ENST00000568105 661 ntBASIC15.3■□□□□ 0.04
FOXA2Q9Y261 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 AC104581.1-202ENST00000635932 2618 ntBASIC15.3■□□□□ 0.04
FOXA2Q9Y261 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA2Q9Y261 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 AL135905.2-201ENST00000584934 1404 ntBASIC15.29■□□□□ 0.04
FOXA2Q9Y261 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms