Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
AP4E1Q9UPM8 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
AP4E1Q9UPM8 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.65■□□□□ 0.74
AP4E1Q9UPM8 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
AP4E1Q9UPM8 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.65■□□□□ 0.74
AP4E1Q9UPM8 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
AP4E1Q9UPM8 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
AP4E1Q9UPM8 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.65■□□□□ 0.74
AP4E1Q9UPM8 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
AP4E1Q9UPM8 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.65■□□□□ 0.74
AP4E1Q9UPM8 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
AP4E1Q9UPM8 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
AP4E1Q9UPM8 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
AP4E1Q9UPM8 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
AP4E1Q9UPM8 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
AP4E1Q9UPM8 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 MFAP1P1-201ENST00000442257 1255 ntBASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 AC097488.1-201ENST00000507834 756 ntBASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 AC083906.6-201ENST00000641366 219 ntBASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
AP4E1Q9UPM8 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 KRT8P3-201ENST00000519669 1449 ntBASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
AP4E1Q9UPM8 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 AL020996.1-203ENST00000536896 2307 ntBASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.62■□□□□ 0.73
AP4E1Q9UPM8 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.61■□□□□ 0.73
AP4E1Q9UPM8 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.61■□□□□ 0.73
AP4E1Q9UPM8 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
AP4E1Q9UPM8 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.61■□□□□ 0.73
AP4E1Q9UPM8 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms