Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC22.32■■□□□ 1.16
RNF41Q9H4P4 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RNF41Q9H4P4 SLC25A3P1-201ENST00000443844 931 ntBASIC22.32■■□□□ 1.16
RNF41Q9H4P4 GPX4-207ENST00000589115 812 ntTSL 2 BASIC22.32■■□□□ 1.16
RNF41Q9H4P4 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC22.32■■□□□ 1.16
RNF41Q9H4P4 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC22.32■■□□□ 1.16
RNF41Q9H4P4 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RNF41Q9H4P4 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
RNF41Q9H4P4 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RNF41Q9H4P4 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC22.32■■□□□ 1.16
RNF41Q9H4P4 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
RNF41Q9H4P4 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RNF41Q9H4P4 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RNF41Q9H4P4 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 KRT8P32-201ENST00000512863 1461 ntBASIC22.31■■□□□ 1.16
RNF41Q9H4P4 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 PHB2-202ENST00000440277 996 ntTSL 5 BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 AL512604.3-201ENST00000569583 964 ntBASIC22.31■■□□□ 1.16
RNF41Q9H4P4 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC22.31■■□□□ 1.16
RNF41Q9H4P4 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 GPAT2P1-201ENST00000444924 1672 ntBASIC22.3■■□□□ 1.16
RNF41Q9H4P4 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 AL023284.2-201ENST00000405850 579 ntBASIC22.3■■□□□ 1.16
RNF41Q9H4P4 AC113347.1-201ENST00000413321 391 ntBASIC22.3■■□□□ 1.16
RNF41Q9H4P4 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 MIR4674-201ENST00000582457 87 ntBASIC22.3■■□□□ 1.16
RNF41Q9H4P4 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC22.3■■□□□ 1.16
RNF41Q9H4P4 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 MCCD1P1-208ENST00000445732 328 ntBASIC22.29■■□□□ 1.16
RNF41Q9H4P4 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RNF41Q9H4P4 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RNF41Q9H4P4 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RNF41Q9H4P4 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RNF41Q9H4P4 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC22.28■■□□□ 1.16
RNF41Q9H4P4 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
RNF41Q9H4P4 RCC2P3-201ENST00000418112 1537 ntBASIC22.28■■□□□ 1.16
RNF41Q9H4P4 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
RNF41Q9H4P4 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RNF41Q9H4P4 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RNF41Q9H4P4 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC22.28■■□□□ 1.16
RNF41Q9H4P4 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RNF41Q9H4P4 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RNF41Q9H4P4 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RNF41Q9H4P4 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC22.28■■□□□ 1.16
RNF41Q9H4P4 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC22.28■■□□□ 1.16
RNF41Q9H4P4 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms