Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC16.7■□□□□ 0.26
VRK1Q99986 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VRK1Q99986 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC16.7■□□□□ 0.26
VRK1Q99986 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VRK1Q99986 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC16.7■□□□□ 0.26
VRK1Q99986 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VRK1Q99986 AC087499.1-201ENST00000418141 1075 ntBASIC16.7■□□□□ 0.26
VRK1Q99986 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VRK1Q99986 NUDT16P1-203ENST00000513809 620 ntBASIC16.7■□□□□ 0.26
VRK1Q99986 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.7■□□□□ 0.26
VRK1Q99986 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VRK1Q99986 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.7■□□□□ 0.26
VRK1Q99986 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
VRK1Q99986 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
VRK1Q99986 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VRK1Q99986 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
VRK1Q99986 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.7■□□□□ 0.26
VRK1Q99986 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
VRK1Q99986 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VRK1Q99986 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VRK1Q99986 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VRK1Q99986 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VRK1Q99986 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC16.69■□□□□ 0.26
VRK1Q99986 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC16.69■□□□□ 0.26
VRK1Q99986 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VRK1Q99986 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VRK1Q99986 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC16.69■□□□□ 0.26
VRK1Q99986 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
VRK1Q99986 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VRK1Q99986 GOLGA6L3-201ENST00000507199 1679 ntBASIC16.69■□□□□ 0.26
VRK1Q99986 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
VRK1Q99986 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC16.69■□□□□ 0.26
VRK1Q99986 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VRK1Q99986 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VRK1Q99986 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC16.69■□□□□ 0.26
VRK1Q99986 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC16.69■□□□□ 0.26
VRK1Q99986 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.69■□□□□ 0.26
VRK1Q99986 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VRK1Q99986 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC16.69■□□□□ 0.26
VRK1Q99986 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VRK1Q99986 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC16.69■□□□□ 0.26
VRK1Q99986 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.69■□□□□ 0.26
VRK1Q99986 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC16.69■□□□□ 0.26
VRK1Q99986 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.69■□□□□ 0.26
VRK1Q99986 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.69■□□□□ 0.26
VRK1Q99986 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VRK1Q99986 AL049812.1-201ENST00000432563 2267 ntBASIC16.69■□□□□ 0.26
VRK1Q99986 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC16.69■□□□□ 0.26
VRK1Q99986 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VRK1Q99986 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VRK1Q99986 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VRK1Q99986 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VRK1Q99986 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC16.69■□□□□ 0.26
VRK1Q99986 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VRK1Q99986 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
VRK1Q99986 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
VRK1Q99986 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
VRK1Q99986 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
VRK1Q99986 UNC93B2-201ENST00000285383 730 ntBASIC16.68■□□□□ 0.26
VRK1Q99986 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC16.68■□□□□ 0.26
VRK1Q99986 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC16.68■□□□□ 0.26
VRK1Q99986 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16.68■□□□□ 0.26
VRK1Q99986 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.68■□□□□ 0.26
VRK1Q99986 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC16.68■□□□□ 0.26
VRK1Q99986 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
VRK1Q99986 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
VRK1Q99986 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
VRK1Q99986 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
VRK1Q99986 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC16.68■□□□□ 0.26
VRK1Q99986 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 BX119927.1-201ENST00000636596 1552 ntBASIC16.68■□□□□ 0.26
VRK1Q99986 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK1Q99986 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC16.68■□□□□ 0.26
VRK1Q99986 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK1Q99986 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK1Q99986 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK1Q99986 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK1Q99986 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VRK1Q99986 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
VRK1Q99986 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms