Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDX2Q99626 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDX2Q99626 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.79■□□□□ 0.76
CDX2Q99626 SYS1-203ENST00000414310 795 ntTSL 3 BASIC19.79■□□□□ 0.76
CDX2Q99626 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC19.79■□□□□ 0.76
CDX2Q99626 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CDX2Q99626 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC19.79■□□□□ 0.76
CDX2Q99626 AC104390.1-201ENST00000555663 520 ntBASIC19.79■□□□□ 0.76
CDX2Q99626 AC002347.1-201ENST00000569543 541 ntBASIC19.79■□□□□ 0.76
CDX2Q99626 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.79■□□□□ 0.76
CDX2Q99626 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDX2Q99626 AP001269.4-201ENST00000609611 512 ntBASIC19.79■□□□□ 0.76
CDX2Q99626 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.79■□□□□ 0.76
CDX2Q99626 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CDX2Q99626 TREX1-205ENST00000625293 1783 ntBASIC19.79■□□□□ 0.76
CDX2Q99626 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDX2Q99626 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
CDX2Q99626 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CDX2Q99626 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CDX2Q99626 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CDX2Q99626 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CDX2Q99626 RBM17P3-201ENST00000417687 1192 ntBASIC19.78■□□□□ 0.76
CDX2Q99626 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CDX2Q99626 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.78■□□□□ 0.76
CDX2Q99626 RNA5SP416-201ENST00000516838 111 ntBASIC19.78■□□□□ 0.76
CDX2Q99626 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.78■□□□□ 0.76
CDX2Q99626 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CDX2Q99626 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CDX2Q99626 AC011467.4-201ENST00000594891 528 ntBASIC19.78■□□□□ 0.76
CDX2Q99626 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.78■□□□□ 0.76
CDX2Q99626 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CDX2Q99626 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.78■□□□□ 0.76
CDX2Q99626 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
CDX2Q99626 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CDX2Q99626 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.78■□□□□ 0.76
CDX2Q99626 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.78■□□□□ 0.76
CDX2Q99626 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CDX2Q99626 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CDX2Q99626 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CDX2Q99626 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CDX2Q99626 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC19.77■□□□□ 0.76
CDX2Q99626 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CDX2Q99626 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CDX2Q99626 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC19.77■□□□□ 0.76
CDX2Q99626 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CDX2Q99626 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CDX2Q99626 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC19.77■□□□□ 0.76
CDX2Q99626 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CDX2Q99626 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CDX2Q99626 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CDX2Q99626 MIR770-201ENST00000390219 98 ntBASIC19.77■□□□□ 0.76
CDX2Q99626 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CDX2Q99626 AL645939.2-201ENST00000427340 991 ntBASIC19.77■□□□□ 0.76
CDX2Q99626 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CDX2Q99626 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC19.77■□□□□ 0.76
CDX2Q99626 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.77■□□□□ 0.76
CDX2Q99626 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CDX2Q99626 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC19.77■□□□□ 0.76
CDX2Q99626 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.77■□□□□ 0.76
CDX2Q99626 MTDHP5-201ENST00000598980 586 ntBASIC19.77■□□□□ 0.76
CDX2Q99626 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CDX2Q99626 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.77■□□□□ 0.75
CDX2Q99626 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CDX2Q99626 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CDX2Q99626 HLA-J-201ENST00000462773 1622 ntBASIC19.76■□□□□ 0.75
CDX2Q99626 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CDX2Q99626 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CDX2Q99626 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CDX2Q99626 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.76■□□□□ 0.75
CDX2Q99626 AL353692.3-201ENST00000407031 1396 ntBASIC19.76■□□□□ 0.75
CDX2Q99626 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CDX2Q99626 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CDX2Q99626 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.76■□□□□ 0.75
CDX2Q99626 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.76■□□□□ 0.75
CDX2Q99626 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC19.76■□□□□ 0.75
CDX2Q99626 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.76■□□□□ 0.75
CDX2Q99626 SNHG9-202ENST00000564014 471 ntBASIC19.76■□□□□ 0.75
CDX2Q99626 ORC5-208ENST00000626700 344 ntTSL 3 BASIC19.76■□□□□ 0.75
CDX2Q99626 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CDX2Q99626 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CDX2Q99626 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
CDX2Q99626 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CDX2Q99626 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDX2Q99626 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDX2Q99626 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDX2Q99626 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDX2Q99626 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
CDX2Q99626 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CDX2Q99626 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CDX2Q99626 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC19.75■□□□□ 0.75
CDX2Q99626 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDX2Q99626 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDX2Q99626 AC023274.1-201ENST00000418278 595 ntBASIC19.75■□□□□ 0.75
CDX2Q99626 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CDX2Q99626 RPS2P1-201ENST00000434010 821 ntBASIC19.75■□□□□ 0.75
CDX2Q99626 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC19.75■□□□□ 0.75
CDX2Q99626 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.75■□□□□ 0.75
CDX2Q99626 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDX2Q99626 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDX2Q99626 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms