Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS35Q96QK1 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS35Q96QK1 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.78■□□□□ 0.6
VPS35Q96QK1 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS35Q96QK1 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS35Q96QK1 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS35Q96QK1 AL353719.1-201ENST00000566847 864 ntBASIC18.78■□□□□ 0.6
VPS35Q96QK1 AC133561.5-201ENST00000635547 218 ntBASIC18.78■□□□□ 0.6
VPS35Q96QK1 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS35Q96QK1 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS35Q96QK1 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS35Q96QK1 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS35Q96QK1 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS35Q96QK1 LINC01568-207ENST00000641790 1380 ntBASIC18.78■□□□□ 0.6
VPS35Q96QK1 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS35Q96QK1 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS35Q96QK1 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS35Q96QK1 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS35Q96QK1 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS35Q96QK1 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS35Q96QK1 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS35Q96QK1 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS35Q96QK1 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS35Q96QK1 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS35Q96QK1 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS35Q96QK1 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS35Q96QK1 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS35Q96QK1 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS35Q96QK1 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS35Q96QK1 AC211429.1-201ENST00000415277 523 ntBASIC18.77■□□□□ 0.6
VPS35Q96QK1 LINC01023-201ENST00000606054 436 ntBASIC18.77■□□□□ 0.6
VPS35Q96QK1 AC010653.2-201ENST00000623505 997 ntBASIC18.77■□□□□ 0.6
VPS35Q96QK1 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS35Q96QK1 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS35Q96QK1 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS35Q96QK1 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS35Q96QK1 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS35Q96QK1 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
VPS35Q96QK1 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
VPS35Q96QK1 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS35Q96QK1 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS35Q96QK1 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS35Q96QK1 AL161938.1-201ENST00000569833 2180 ntBASIC18.76■□□□□ 0.59
VPS35Q96QK1 KRT18P22-201ENST00000402024 1347 ntBASIC18.76■□□□□ 0.59
VPS35Q96QK1 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS35Q96QK1 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS35Q96QK1 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
VPS35Q96QK1 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS35Q96QK1 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS35Q96QK1 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
VPS35Q96QK1 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS35Q96QK1 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS35Q96QK1 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS35Q96QK1 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS35Q96QK1 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.76■□□□□ 0.59
VPS35Q96QK1 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS35Q96QK1 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS35Q96QK1 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS35Q96QK1 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS35Q96QK1 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS35Q96QK1 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.76■□□□□ 0.59
VPS35Q96QK1 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS35Q96QK1 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS35Q96QK1 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS35Q96QK1 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.76■□□□□ 0.59
VPS35Q96QK1 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS35Q96QK1 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS35Q96QK1 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS35Q96QK1 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
VPS35Q96QK1 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS35Q96QK1 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.75■□□□□ 0.59
VPS35Q96QK1 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS35Q96QK1 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.75■□□□□ 0.59
VPS35Q96QK1 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
VPS35Q96QK1 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS35Q96QK1 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS35Q96QK1 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
VPS35Q96QK1 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS35Q96QK1 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS35Q96QK1 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS35Q96QK1 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS35Q96QK1 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.75■□□□□ 0.59
VPS35Q96QK1 AC007663.1-201ENST00000438948 1240 ntBASIC18.75■□□□□ 0.59
VPS35Q96QK1 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.75■□□□□ 0.59
VPS35Q96QK1 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.75■□□□□ 0.59
VPS35Q96QK1 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS35Q96QK1 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.75■□□□□ 0.59
VPS35Q96QK1 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.75■□□□□ 0.59
VPS35Q96QK1 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.75■□□□□ 0.59
VPS35Q96QK1 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS35Q96QK1 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS35Q96QK1 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
VPS35Q96QK1 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.75■□□□□ 0.59
VPS35Q96QK1 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS35Q96QK1 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS35Q96QK1 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS35Q96QK1 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS35Q96QK1 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VPS35Q96QK1 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VPS35Q96QK1 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms