Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 IER3-202ENST00000376377 1350 ntBASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 HIST1H2APS4-201ENST00000362070 348 ntBASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 PRSS44-201ENST00000515154 1146 ntBASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 CD320-202ENST00000537716 1119 ntTSL 2 BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
NKX2-3Q8TAU0 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
NKX2-3Q8TAU0 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
NKX2-3Q8TAU0 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
NKX2-3Q8TAU0 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
NKX2-3Q8TAU0 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
NKX2-3Q8TAU0 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
NKX2-3Q8TAU0 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC22.41■■□□□ 1.18
NKX2-3Q8TAU0 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC22.41■■□□□ 1.18
NKX2-3Q8TAU0 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC22.41■■□□□ 1.18
NKX2-3Q8TAU0 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC22.41■■□□□ 1.18
NKX2-3Q8TAU0 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
NKX2-3Q8TAU0 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
NKX2-3Q8TAU0 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
NKX2-3Q8TAU0 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
NKX2-3Q8TAU0 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC22.41■■□□□ 1.18
NKX2-3Q8TAU0 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 AC092338.2-201ENST00000568827 1415 ntBASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 AC007663.1-201ENST00000438948 1240 ntBASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 YBX1P2-201ENST00000489612 999 ntBASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 NDUFV2-AS1-203ENST00000608008 779 ntBASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC22.4■■□□□ 1.18
NKX2-3Q8TAU0 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC22.39■■□□□ 1.18
NKX2-3Q8TAU0 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
NKX2-3Q8TAU0 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC22.39■■□□□ 1.18
NKX2-3Q8TAU0 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 AC098818.2-201ENST00000564925 2320 ntBASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 FAM86EP-206ENST00000510506 987 ntBASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 AL138966.2-201ENST00000621997 464 ntBASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 AC093458.2-201ENST00000623150 629 ntBASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
NKX2-3Q8TAU0 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
NKX2-3Q8TAU0 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms