Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC22.45■■□□□ 1.18
SMC1BQ8NDV3 IMP4-203ENST00000409935 958 ntTSL 5 BASIC22.45■■□□□ 1.18
SMC1BQ8NDV3 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC22.45■■□□□ 1.18
SMC1BQ8NDV3 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC22.45■■□□□ 1.18
SMC1BQ8NDV3 AL355877.3-201ENST00000622820 899 ntBASIC22.45■■□□□ 1.18
SMC1BQ8NDV3 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SMC1BQ8NDV3 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SMC1BQ8NDV3 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
SMC1BQ8NDV3 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC22.45■■□□□ 1.18
SMC1BQ8NDV3 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
SMC1BQ8NDV3 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
SMC1BQ8NDV3 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
SMC1BQ8NDV3 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC22.45■■□□□ 1.18
SMC1BQ8NDV3 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC22.45■■□□□ 1.18
SMC1BQ8NDV3 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SMC1BQ8NDV3 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SMC1BQ8NDV3 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 RPS2P28-201ENST00000314255 741 ntBASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 HIST2H3DP1-201ENST00000401004 416 ntBASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 AL023284.2-201ENST00000405850 579 ntBASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 AP005901.3-202ENST00000581653 237 ntBASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC22.44■■□□□ 1.18
SMC1BQ8NDV3 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
SMC1BQ8NDV3 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC22.43■■□□□ 1.18
SMC1BQ8NDV3 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SMC1BQ8NDV3 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC22.43■■□□□ 1.18
SMC1BQ8NDV3 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SMC1BQ8NDV3 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SMC1BQ8NDV3 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC22.43■■□□□ 1.18
SMC1BQ8NDV3 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SMC1BQ8NDV3 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SMC1BQ8NDV3 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
SMC1BQ8NDV3 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC22.43■■□□□ 1.18
SMC1BQ8NDV3 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC22.43■■□□□ 1.18
SMC1BQ8NDV3 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SMC1BQ8NDV3 GPR32P1-201ENST00000601788 811 ntBASIC22.43■■□□□ 1.18
SMC1BQ8NDV3 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC22.43■■□□□ 1.18
SMC1BQ8NDV3 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC22.43■■□□□ 1.18
SMC1BQ8NDV3 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SMC1BQ8NDV3 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC22.43■■□□□ 1.18
SMC1BQ8NDV3 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 DNAJB3-202ENST00000449667 1266 ntBASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 CYMP-203ENST00000474680 1263 ntBASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SMC1BQ8NDV3 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 KRT18P28-201ENST00000453838 1332 ntBASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 FAM8A3P-201ENST00000427218 844 ntBASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 RN7SL606P-201ENST00000472779 293 ntBASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 HLA-J-203ENST00000494367 1087 ntBASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC22.41■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms