Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 AC087388.1-201ENST00000571370 1112 ntBASIC17.56■□□□□ 0.4
BEST3Q8N1M1 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 TSPY23P-201ENST00000440136 739 ntBASIC17.55■□□□□ 0.4
BEST3Q8N1M1 COX11P1-201ENST00000489116 835 ntBASIC17.55■□□□□ 0.4
BEST3Q8N1M1 AC022616.7-201ENST00000525383 220 ntBASIC17.55■□□□□ 0.4
BEST3Q8N1M1 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 AL512604.3-201ENST00000569583 964 ntBASIC17.55■□□□□ 0.4
BEST3Q8N1M1 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.55■□□□□ 0.4
BEST3Q8N1M1 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.55■□□□□ 0.4
BEST3Q8N1M1 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 YBX1P2-201ENST00000489612 999 ntBASIC17.54■□□□□ 0.4
BEST3Q8N1M1 AC063952.2-201ENST00000498792 1227 ntBASIC17.54■□□□□ 0.4
BEST3Q8N1M1 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BEST3Q8N1M1 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 RNF152P1-201ENST00000397754 604 ntBASIC17.53■□□□□ 0.4
BEST3Q8N1M1 TSPY21P-201ENST00000433481 731 ntBASIC17.53■□□□□ 0.4
BEST3Q8N1M1 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 KRT8P45-201ENST00000414328 1447 ntBASIC17.53■□□□□ 0.4
BEST3Q8N1M1 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
BEST3Q8N1M1 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms