Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.38■□□□□ 0.53
RNF111Q6ZNA4 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
RNF111Q6ZNA4 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF111Q6ZNA4 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
RNF111Q6ZNA4 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF111Q6ZNA4 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF111Q6ZNA4 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
RNF111Q6ZNA4 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.38■□□□□ 0.53
RNF111Q6ZNA4 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.38■□□□□ 0.53
RNF111Q6ZNA4 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.38■□□□□ 0.53
RNF111Q6ZNA4 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF111Q6ZNA4 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF111Q6ZNA4 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF111Q6ZNA4 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF111Q6ZNA4 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF111Q6ZNA4 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF111Q6ZNA4 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF111Q6ZNA4 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.38■□□□□ 0.53
RNF111Q6ZNA4 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF111Q6ZNA4 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 RN7SL471P-201ENST00000580476 299 ntBASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
RNF111Q6ZNA4 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 TFP1-202ENST00000475455 1573 ntBASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 AC239809.2-201ENST00000415381 517 ntBASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF111Q6ZNA4 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms