Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 NAA38-203ENST00000575071 553 ntTSL 2 BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC23.17■■□□□ 1.3
CCDC88AQ3V6T2 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
CCDC88AQ3V6T2 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC88AQ3V6T2 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC88AQ3V6T2 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC88AQ3V6T2 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC23.16■■□□□ 1.3
CCDC88AQ3V6T2 ANKRD18DP-204ENST00000455355 1975 ntBASIC23.16■■□□□ 1.3
CCDC88AQ3V6T2 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC88AQ3V6T2 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC88AQ3V6T2 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
CCDC88AQ3V6T2 AC117500.6-201ENST00000624871 588 ntBASIC23.16■■□□□ 1.3
CCDC88AQ3V6T2 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
CCDC88AQ3V6T2 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC88AQ3V6T2 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC88AQ3V6T2 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC23.16■■□□□ 1.3
CCDC88AQ3V6T2 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC23.16■■□□□ 1.3
CCDC88AQ3V6T2 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC23.16■■□□□ 1.3
CCDC88AQ3V6T2 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC88AQ3V6T2 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 RPP21-221ENST00000428040 594 ntTSL 2 BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 AL121772.3-201ENST00000610840 674 ntBASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 AC092865.5-201ENST00000545435 363 ntBASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC23.15■■□□□ 1.3
CCDC88AQ3V6T2 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
CCDC88AQ3V6T2 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
CCDC88AQ3V6T2 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
CCDC88AQ3V6T2 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC23.14■■□□□ 1.3
CCDC88AQ3V6T2 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
CCDC88AQ3V6T2 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
CCDC88AQ3V6T2 GOLGA6L5P-202ENST00000515341 1828 ntBASIC23.14■■□□□ 1.29
CCDC88AQ3V6T2 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC23.14■■□□□ 1.29
CCDC88AQ3V6T2 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC23.14■■□□□ 1.29
CCDC88AQ3V6T2 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC23.14■■□□□ 1.29
CCDC88AQ3V6T2 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC23.14■■□□□ 1.29
CCDC88AQ3V6T2 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
CCDC88AQ3V6T2 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC88AQ3V6T2 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC88AQ3V6T2 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
CCDC88AQ3V6T2 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC23.13■■□□□ 1.29
CCDC88AQ3V6T2 SAPCD2P3-201ENST00000455031 850 ntBASIC23.13■■□□□ 1.29
CCDC88AQ3V6T2 KRT18P58-201ENST00000527480 1120 ntBASIC23.13■■□□□ 1.29
CCDC88AQ3V6T2 AC091304.2-201ENST00000564639 760 ntBASIC23.13■■□□□ 1.29
CCDC88AQ3V6T2 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC88AQ3V6T2 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC23.13■■□□□ 1.29
CCDC88AQ3V6T2 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC88AQ3V6T2 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC23.13■■□□□ 1.29
CCDC88AQ3V6T2 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
CCDC88AQ3V6T2 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC88AQ3V6T2 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC88AQ3V6T2 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
CCDC88AQ3V6T2 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
CCDC88AQ3V6T2 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC23.13■■□□□ 1.29
CCDC88AQ3V6T2 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC88AQ3V6T2 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC23.12■■□□□ 1.29
CCDC88AQ3V6T2 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC88AQ3V6T2 MIR662-201ENST00000384847 95 ntBASIC23.12■■□□□ 1.29
CCDC88AQ3V6T2 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC23.12■■□□□ 1.29
CCDC88AQ3V6T2 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC23.12■■□□□ 1.29
CCDC88AQ3V6T2 REXO1L6P-202ENST00000619970 1078 ntBASIC23.12■■□□□ 1.29
CCDC88AQ3V6T2 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC23.12■■□□□ 1.29
CCDC88AQ3V6T2 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC88AQ3V6T2 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC88AQ3V6T2 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC88AQ3V6T2 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC88AQ3V6T2 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 AL590627.1-203ENST00000421194 1026 ntBASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 AF238378.1-201ENST00000526806 358 ntBASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC23.11■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms