Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.47■□□□□ 0.55
YBX1P67809 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
YBX1P67809 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.47■□□□□ 0.55
YBX1P67809 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.47■□□□□ 0.55
YBX1P67809 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
YBX1P67809 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.47■□□□□ 0.55
YBX1P67809 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.47■□□□□ 0.55
YBX1P67809 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
YBX1P67809 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.47■□□□□ 0.55
YBX1P67809 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
YBX1P67809 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
YBX1P67809 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.47■□□□□ 0.55
YBX1P67809 FSCN1P1-201ENST00000568912 1481 ntBASIC18.46■□□□□ 0.55
YBX1P67809 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
YBX1P67809 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
YBX1P67809 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
YBX1P67809 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.46■□□□□ 0.55
YBX1P67809 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
YBX1P67809 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
YBX1P67809 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
YBX1P67809 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
YBX1P67809 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
YBX1P67809 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
YBX1P67809 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
YBX1P67809 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
YBX1P67809 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
YBX1P67809 AL390955.1-201ENST00000428694 934 ntBASIC18.46■□□□□ 0.55
YBX1P67809 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.46■□□□□ 0.55
YBX1P67809 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
YBX1P67809 AP000525.1-201ENST00000608286 694 ntBASIC18.46■□□□□ 0.55
YBX1P67809 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
YBX1P67809 LETM1P2-201ENST00000597330 2178 ntBASIC18.46■□□□□ 0.55
YBX1P67809 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.46■□□□□ 0.55
YBX1P67809 KRT8P11-201ENST00000409686 1436 ntBASIC18.46■□□□□ 0.55
YBX1P67809 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.46■□□□□ 0.55
YBX1P67809 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.46■□□□□ 0.55
YBX1P67809 AC141586.3-201ENST00000562166 1838 ntBASIC18.46■□□□□ 0.55
YBX1P67809 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
YBX1P67809 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
YBX1P67809 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
YBX1P67809 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.46■□□□□ 0.55
YBX1P67809 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
YBX1P67809 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
YBX1P67809 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
YBX1P67809 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.46■□□□□ 0.54
YBX1P67809 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
YBX1P67809 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.45■□□□□ 0.54
YBX1P67809 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
YBX1P67809 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.45■□□□□ 0.54
YBX1P67809 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.45■□□□□ 0.54
YBX1P67809 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
YBX1P67809 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
YBX1P67809 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
YBX1P67809 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.45■□□□□ 0.54
YBX1P67809 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
YBX1P67809 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.45■□□□□ 0.54
YBX1P67809 TSPY23P-201ENST00000440136 739 ntBASIC18.45■□□□□ 0.54
YBX1P67809 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
YBX1P67809 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.45■□□□□ 0.54
YBX1P67809 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
YBX1P67809 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.45■□□□□ 0.54
YBX1P67809 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.45■□□□□ 0.54
YBX1P67809 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.45■□□□□ 0.54
YBX1P67809 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.45■□□□□ 0.54
YBX1P67809 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
YBX1P67809 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
YBX1P67809 KRT17P2-201ENST00000300992 1314 ntBASIC18.45■□□□□ 0.54
YBX1P67809 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
YBX1P67809 AC018470.1-201ENST00000624790 3129 ntBASIC18.45■□□□□ 0.54
YBX1P67809 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
YBX1P67809 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 KRT8P9-201ENST00000558927 1449 ntBASIC18.44■□□□□ 0.54
YBX1P67809 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.44■□□□□ 0.54
YBX1P67809 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.44■□□□□ 0.54
YBX1P67809 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.44■□□□□ 0.54
YBX1P67809 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.44■□□□□ 0.54
YBX1P67809 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.44■□□□□ 0.54
YBX1P67809 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
YBX1P67809 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
YBX1P67809 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
YBX1P67809 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
YBX1P67809 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.43■□□□□ 0.54
YBX1P67809 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms