Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC14.22□□□□□ -0.13
FOXA3P55318 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
FOXA3P55318 MFSD11-216ENST00000590393 1141 ntBASIC14.22□□□□□ -0.13
FOXA3P55318 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC14.22□□□□□ -0.13
FOXA3P55318 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
FOXA3P55318 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC14.22□□□□□ -0.13
FOXA3P55318 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC14.22□□□□□ -0.13
FOXA3P55318 UBQLN4P1-201ENST00000461599 1801 ntBASIC14.22□□□□□ -0.13
FOXA3P55318 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
FOXA3P55318 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
FOXA3P55318 AC116351.2-201ENST00000606540 1585 ntBASIC14.22□□□□□ -0.13
FOXA3P55318 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA3P55318 LINC02228-203ENST00000641970 1355 ntBASIC14.22□□□□□ -0.13
FOXA3P55318 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.13
FOXA3P55318 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
FOXA3P55318 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 FEM1AP3-201ENST00000403722 1741 ntBASIC14.21□□□□□ -0.13
FOXA3P55318 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
FOXA3P55318 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
FOXA3P55318 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 AC008764.6-201ENST00000595909 2069 ntBASIC14.21□□□□□ -0.13
FOXA3P55318 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC14.21□□□□□ -0.13
FOXA3P55318 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 MCRIP2P1-201ENST00000394346 511 ntBASIC14.21□□□□□ -0.13
FOXA3P55318 RHOF-204ENST00000537265 699 ntTSL 2 BASIC14.21□□□□□ -0.13
FOXA3P55318 AL031432.3-201ENST00000607698 485 ntBASIC14.21□□□□□ -0.13
FOXA3P55318 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC14.21□□□□□ -0.13
FOXA3P55318 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA3P55318 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
FOXA3P55318 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
FOXA3P55318 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.14
FOXA3P55318 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
FOXA3P55318 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
FOXA3P55318 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
FOXA3P55318 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA3P55318 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA3P55318 AC009053.2-201ENST00000563701 2365 ntBASIC14.2□□□□□ -0.14
FOXA3P55318 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC14.2□□□□□ -0.14
FOXA3P55318 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA3P55318 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC14.2□□□□□ -0.14
FOXA3P55318 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA3P55318 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
FOXA3P55318 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA3P55318 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
FOXA3P55318 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA3P55318 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA3P55318 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
FOXA3P55318 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA3P55318 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA3P55318 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA3P55318 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC14.2□□□□□ -0.14
FOXA3P55318 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA3P55318 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA3P55318 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC14.2□□□□□ -0.14
FOXA3P55318 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA3P55318 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC14.2□□□□□ -0.14
FOXA3P55318 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC14.2□□□□□ -0.14
FOXA3P55318 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA3P55318 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA3P55318 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA3P55318 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
FOXA3P55318 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC14.2□□□□□ -0.14
FOXA3P55318 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
FOXA3P55318 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC14.2□□□□□ -0.14
FOXA3P55318 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
FOXA3P55318 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
FOXA3P55318 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA3P55318 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC14.19□□□□□ -0.14
FOXA3P55318 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms