Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCNFP41002 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCNFP41002 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCNFP41002 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCNFP41002 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCNFP41002 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCNFP41002 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCNFP41002 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CCNFP41002 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCNFP41002 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.04■□□□□ 0.64
CCNFP41002 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCNFP41002 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCNFP41002 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CCNFP41002 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCNFP41002 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCNFP41002 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.04■□□□□ 0.64
CCNFP41002 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCNFP41002 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCNFP41002 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCNFP41002 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
CCNFP41002 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
CCNFP41002 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.04■□□□□ 0.64
CCNFP41002 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCNFP41002 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
CCNFP41002 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.04■□□□□ 0.64
CCNFP41002 RPPH1-201ENST00000516869 333 ntBASIC19.04■□□□□ 0.64
CCNFP41002 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.04■□□□□ 0.64
CCNFP41002 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.04■□□□□ 0.64
CCNFP41002 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCNFP41002 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCNFP41002 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCNFP41002 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
CCNFP41002 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.04■□□□□ 0.64
CCNFP41002 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CCNFP41002 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CCNFP41002 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCNFP41002 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCNFP41002 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.04■□□□□ 0.64
CCNFP41002 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.03■□□□□ 0.64
CCNFP41002 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCNFP41002 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCNFP41002 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCNFP41002 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CCNFP41002 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
CCNFP41002 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCNFP41002 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCNFP41002 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.03■□□□□ 0.64
CCNFP41002 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
CCNFP41002 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCNFP41002 PRORSD1P-201ENST00000295112 541 ntBASIC19.03■□□□□ 0.64
CCNFP41002 KRT16P5-201ENST00000455284 522 ntBASIC19.03■□□□□ 0.64
CCNFP41002 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.03■□□□□ 0.64
CCNFP41002 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.03■□□□□ 0.64
CCNFP41002 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.03■□□□□ 0.64
CCNFP41002 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCNFP41002 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.03■□□□□ 0.64
CCNFP41002 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCNFP41002 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CCNFP41002 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.03■□□□□ 0.64
CCNFP41002 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.03■□□□□ 0.64
CCNFP41002 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
CCNFP41002 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCNFP41002 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CCNFP41002 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCNFP41002 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.03■□□□□ 0.64
CCNFP41002 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.03■□□□□ 0.64
CCNFP41002 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCNFP41002 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
CCNFP41002 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.03■□□□□ 0.64
CCNFP41002 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCNFP41002 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
CCNFP41002 AIRN-201ENST00000601203 4374 ntBASIC19.02■□□□□ 0.64
CCNFP41002 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CCNFP41002 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCNFP41002 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.02■□□□□ 0.64
CCNFP41002 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCNFP41002 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCNFP41002 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.02■□□□□ 0.64
CCNFP41002 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.02■□□□□ 0.64
CCNFP41002 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCNFP41002 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCNFP41002 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
CCNFP41002 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCNFP41002 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCNFP41002 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
CCNFP41002 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCNFP41002 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCNFP41002 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCNFP41002 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.02■□□□□ 0.64
CCNFP41002 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCNFP41002 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.02■□□□□ 0.63
CCNFP41002 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.02■□□□□ 0.63
CCNFP41002 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CCNFP41002 NOC2LP2-201ENST00000407594 1944 ntBASIC19.02■□□□□ 0.63
CCNFP41002 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCNFP41002 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCNFP41002 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.01■□□□□ 0.63
CCNFP41002 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CCNFP41002 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCNFP41002 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms