Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHMT2P34897 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHMT2P34897 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.54■□□□□ 0.56
SHMT2P34897 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.54■□□□□ 0.56
SHMT2P34897 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.54■□□□□ 0.56
SHMT2P34897 AC087499.1-201ENST00000418141 1075 ntBASIC18.54■□□□□ 0.56
SHMT2P34897 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.54■□□□□ 0.56
SHMT2P34897 AL390955.1-201ENST00000428694 934 ntBASIC18.54■□□□□ 0.56
SHMT2P34897 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.54■□□□□ 0.56
SHMT2P34897 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.54■□□□□ 0.56
SHMT2P34897 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.54■□□□□ 0.56
SHMT2P34897 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.54■□□□□ 0.56
SHMT2P34897 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.54■□□□□ 0.56
SHMT2P34897 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.54■□□□□ 0.56
SHMT2P34897 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHMT2P34897 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHMT2P34897 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.54■□□□□ 0.56
SHMT2P34897 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHMT2P34897 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHMT2P34897 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHMT2P34897 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.54■□□□□ 0.56
SHMT2P34897 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHMT2P34897 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.54■□□□□ 0.56
SHMT2P34897 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHMT2P34897 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHMT2P34897 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.53■□□□□ 0.56
SHMT2P34897 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHMT2P34897 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SHMT2P34897 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.53■□□□□ 0.56
SHMT2P34897 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
SHMT2P34897 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.53■□□□□ 0.56
SHMT2P34897 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHMT2P34897 KRT8P11-201ENST00000409686 1436 ntBASIC18.53■□□□□ 0.56
SHMT2P34897 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.53■□□□□ 0.56
SHMT2P34897 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.53■□□□□ 0.56
SHMT2P34897 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SHMT2P34897 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.53■□□□□ 0.56
SHMT2P34897 CKBP1-201ENST00000565489 1086 ntBASIC18.53■□□□□ 0.56
SHMT2P34897 C2orf69P3-201ENST00000565542 1120 ntBASIC18.53■□□□□ 0.56
SHMT2P34897 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SHMT2P34897 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.53■□□□□ 0.56
SHMT2P34897 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHMT2P34897 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
SHMT2P34897 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHMT2P34897 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHMT2P34897 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
SHMT2P34897 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.52■□□□□ 0.56
SHMT2P34897 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.52■□□□□ 0.56
SHMT2P34897 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SHMT2P34897 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHMT2P34897 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
SHMT2P34897 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SHMT2P34897 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHMT2P34897 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHMT2P34897 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SHMT2P34897 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHMT2P34897 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.56
SHMT2P34897 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHMT2P34897 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.52■□□□□ 0.56
SHMT2P34897 NAPSB-206ENST00000562112 1266 ntBASIC18.52■□□□□ 0.56
SHMT2P34897 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.52■□□□□ 0.56
SHMT2P34897 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
SHMT2P34897 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.52■□□□□ 0.55
SHMT2P34897 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SHMT2P34897 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SHMT2P34897 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SHMT2P34897 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SHMT2P34897 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SHMT2P34897 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.51■□□□□ 0.55
SHMT2P34897 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.51■□□□□ 0.55
SHMT2P34897 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHMT2P34897 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHMT2P34897 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHMT2P34897 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHMT2P34897 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHMT2P34897 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHMT2P34897 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.51■□□□□ 0.55
SHMT2P34897 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHMT2P34897 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHMT2P34897 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.51■□□□□ 0.55
SHMT2P34897 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.51■□□□□ 0.55
SHMT2P34897 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHMT2P34897 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.51■□□□□ 0.55
SHMT2P34897 TSPY23P-201ENST00000440136 739 ntBASIC18.51■□□□□ 0.55
SHMT2P34897 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.51■□□□□ 0.55
SHMT2P34897 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.51■□□□□ 0.55
SHMT2P34897 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.51■□□□□ 0.55
SHMT2P34897 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.51■□□□□ 0.55
SHMT2P34897 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SHMT2P34897 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHMT2P34897 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHMT2P34897 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SHMT2P34897 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.51■□□□□ 0.55
SHMT2P34897 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.51■□□□□ 0.55
SHMT2P34897 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHMT2P34897 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SHMT2P34897 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SHMT2P34897 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.51■□□□□ 0.55
SHMT2P34897 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHMT2P34897 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms