Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
BDNFP23560 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
BDNFP23560 YBX1P2-201ENST00000489612 999 ntBASIC19.96■□□□□ 0.79
BDNFP23560 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.96■□□□□ 0.79
BDNFP23560 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.96■□□□□ 0.79
BDNFP23560 KRT18P35-201ENST00000510488 1269 ntBASIC19.96■□□□□ 0.79
BDNFP23560 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.96■□□□□ 0.79
BDNFP23560 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
BDNFP23560 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.96■□□□□ 0.79
BDNFP23560 AL590326.2-201ENST00000625139 305 ntBASIC19.96■□□□□ 0.79
BDNFP23560 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
BDNFP23560 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
BDNFP23560 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.96■□□□□ 0.79
BDNFP23560 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
BDNFP23560 AC116562.4-201ENST00000641316 2276 ntBASIC19.96■□□□□ 0.79
BDNFP23560 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
BDNFP23560 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
BDNFP23560 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
BDNFP23560 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
BDNFP23560 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
BDNFP23560 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.95■□□□□ 0.78
BDNFP23560 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
BDNFP23560 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.95■□□□□ 0.78
BDNFP23560 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
BDNFP23560 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
BDNFP23560 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
BDNFP23560 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
BDNFP23560 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
BDNFP23560 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
BDNFP23560 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.95■□□□□ 0.78
BDNFP23560 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.95■□□□□ 0.78
BDNFP23560 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.95■□□□□ 0.78
BDNFP23560 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
BDNFP23560 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.95■□□□□ 0.78
BDNFP23560 WWOX-216ENST00000569818 525 ntBASIC19.95■□□□□ 0.78
BDNFP23560 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.95■□□□□ 0.78
BDNFP23560 CR769767.2-201ENST00000622735 460 ntBASIC19.95■□□□□ 0.78
BDNFP23560 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
BDNFP23560 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
BDNFP23560 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.95■□□□□ 0.78
BDNFP23560 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
BDNFP23560 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
BDNFP23560 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.95■□□□□ 0.78
BDNFP23560 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
BDNFP23560 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
BDNFP23560 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
BDNFP23560 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.94■□□□□ 0.78
BDNFP23560 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
BDNFP23560 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
BDNFP23560 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BDNFP23560 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BDNFP23560 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BDNFP23560 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.94■□□□□ 0.78
BDNFP23560 AC005332.7-201ENST00000614046 2005 ntBASIC19.94■□□□□ 0.78
BDNFP23560 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.94■□□□□ 0.78
BDNFP23560 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.94■□□□□ 0.78
BDNFP23560 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
BDNFP23560 AC009947.2-201ENST00000444014 672 ntBASIC19.94■□□□□ 0.78
BDNFP23560 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.94■□□□□ 0.78
BDNFP23560 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.94■□□□□ 0.78
BDNFP23560 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.94■□□□□ 0.78
BDNFP23560 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.94■□□□□ 0.78
BDNFP23560 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.94■□□□□ 0.78
BDNFP23560 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
BDNFP23560 AC011558.1-201ENST00000623459 338 ntBASIC19.94■□□□□ 0.78
BDNFP23560 AL023973.1-201ENST00000624619 620 ntBASIC19.94■□□□□ 0.78
BDNFP23560 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
BDNFP23560 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
BDNFP23560 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BDNFP23560 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
BDNFP23560 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
BDNFP23560 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
BDNFP23560 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.94■□□□□ 0.78
BDNFP23560 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.94■□□□□ 0.78
BDNFP23560 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BDNFP23560 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BDNFP23560 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
BDNFP23560 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
BDNFP23560 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
BDNFP23560 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BDNFP23560 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
BDNFP23560 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.93■□□□□ 0.78
BDNFP23560 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.93■□□□□ 0.78
BDNFP23560 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.93■□□□□ 0.78
BDNFP23560 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.93■□□□□ 0.78
BDNFP23560 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BDNFP23560 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BDNFP23560 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
BDNFP23560 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
BDNFP23560 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.93■□□□□ 0.78
BDNFP23560 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
BDNFP23560 NTF6B-201ENST00000591913 560 ntBASIC19.93■□□□□ 0.78
BDNFP23560 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.93■□□□□ 0.78
BDNFP23560 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BDNFP23560 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
BDNFP23560 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
BDNFP23560 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BDNFP23560 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.93■□□□□ 0.78
BDNFP23560 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.93■□□□□ 0.78
BDNFP23560 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms