Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH3P20585 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH3P20585 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSH3P20585 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MSH3P20585 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.84■□□□□ 0.61
MSH3P20585 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MSH3P20585 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.84■□□□□ 0.61
MSH3P20585 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MSH3P20585 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.84■□□□□ 0.61
MSH3P20585 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
MSH3P20585 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
MSH3P20585 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
MSH3P20585 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
MSH3P20585 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSH3P20585 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.84■□□□□ 0.61
MSH3P20585 AL390955.1-201ENST00000428694 934 ntBASIC18.84■□□□□ 0.61
MSH3P20585 AP005242.2-201ENST00000580065 1175 ntBASIC18.84■□□□□ 0.61
MSH3P20585 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MSH3P20585 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.84■□□□□ 0.61
MSH3P20585 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSH3P20585 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.84■□□□□ 0.61
MSH3P20585 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSH3P20585 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSH3P20585 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.84■□□□□ 0.61
MSH3P20585 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSH3P20585 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSH3P20585 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
MSH3P20585 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSH3P20585 IRX1P1-201ENST00000438849 1838 ntBASIC18.84■□□□□ 0.61
MSH3P20585 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.83■□□□□ 0.61
MSH3P20585 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.83■□□□□ 0.61
MSH3P20585 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
MSH3P20585 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.83■□□□□ 0.61
MSH3P20585 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
MSH3P20585 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.61
MSH3P20585 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.83■□□□□ 0.61
MSH3P20585 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
MSH3P20585 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
MSH3P20585 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
MSH3P20585 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSH3P20585 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
MSH3P20585 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.83■□□□□ 0.6
MSH3P20585 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
MSH3P20585 FITM1-202ENST00000559294 800 ntBASIC18.83■□□□□ 0.6
MSH3P20585 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.83■□□□□ 0.6
MSH3P20585 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
MSH3P20585 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
MSH3P20585 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSH3P20585 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
MSH3P20585 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSH3P20585 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
MSH3P20585 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSH3P20585 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.6
MSH3P20585 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSH3P20585 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.83■□□□□ 0.6
MSH3P20585 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
MSH3P20585 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
MSH3P20585 FEM1AP3-201ENST00000403722 1741 ntBASIC18.83■□□□□ 0.6
MSH3P20585 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
MSH3P20585 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.82■□□□□ 0.6
MSH3P20585 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.82■□□□□ 0.6
MSH3P20585 FP475955.4-201ENST00000623131 1990 ntBASIC18.82■□□□□ 0.6
MSH3P20585 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.82■□□□□ 0.6
MSH3P20585 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.82■□□□□ 0.6
MSH3P20585 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.82■□□□□ 0.6
MSH3P20585 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 MMP23A-201ENST00000234610 1017 ntBASIC18.82■□□□□ 0.6
MSH3P20585 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
MSH3P20585 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.82■□□□□ 0.6
MSH3P20585 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.82■□□□□ 0.6
MSH3P20585 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 BX088651.1-201ENST00000540551 451 ntBASIC18.82■□□□□ 0.6
MSH3P20585 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.82■□□□□ 0.6
MSH3P20585 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.82■□□□□ 0.6
MSH3P20585 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.82■□□□□ 0.6
MSH3P20585 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.82■□□□□ 0.6
MSH3P20585 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.82■□□□□ 0.6
MSH3P20585 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.82■□□□□ 0.6
MSH3P20585 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
MSH3P20585 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
MSH3P20585 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.82■□□□□ 0.6
MSH3P20585 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH3P20585 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 174 ms