Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC23.19■■□□□ 1.3
COL4A1P02462 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
COL4A1P02462 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A1P02462 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A1P02462 ELP6-205ENST00000439305 880 ntTSL 2 BASIC23.19■■□□□ 1.3
COL4A1P02462 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC23.19■■□□□ 1.3
COL4A1P02462 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC23.19■■□□□ 1.3
COL4A1P02462 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A1P02462 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A1P02462 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A1P02462 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A1P02462 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A1P02462 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC23.19■■□□□ 1.3
COL4A1P02462 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A1P02462 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A1P02462 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC23.19■■□□□ 1.3
COL4A1P02462 AC026396.1-201ENST00000419388 421 ntBASIC23.19■■□□□ 1.3
COL4A1P02462 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC23.19■■□□□ 1.3
COL4A1P02462 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC23.19■■□□□ 1.3
COL4A1P02462 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
COL4A1P02462 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
COL4A1P02462 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
COL4A1P02462 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL4A1P02462 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL4A1P02462 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC23.18■■□□□ 1.3
COL4A1P02462 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL4A1P02462 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL4A1P02462 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL4A1P02462 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
COL4A1P02462 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL4A1P02462 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC23.18■■□□□ 1.3
COL4A1P02462 MPI-205ENST00000562606 1052 ntTSL 3 BASIC23.18■■□□□ 1.3
COL4A1P02462 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC23.18■■□□□ 1.3
COL4A1P02462 AL732292.2-201ENST00000609649 430 ntBASIC23.18■■□□□ 1.3
COL4A1P02462 VPS72-207ENST00000640458 689 ntTSL 5 BASIC23.18■■□□□ 1.3
COL4A1P02462 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
COL4A1P02462 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL4A1P02462 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A1P02462 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A1P02462 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC23.17■■□□□ 1.3
COL4A1P02462 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
COL4A1P02462 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A1P02462 TSSC2-201ENST00000450217 709 ntBASIC23.17■■□□□ 1.3
COL4A1P02462 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC23.17■■□□□ 1.3
COL4A1P02462 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC23.17■■□□□ 1.3
COL4A1P02462 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC23.17■■□□□ 1.3
COL4A1P02462 AP002414.4-201ENST00000589764 1148 ntBASIC23.17■■□□□ 1.3
COL4A1P02462 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A1P02462 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC23.17■■□□□ 1.3
COL4A1P02462 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A1P02462 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC23.17■■□□□ 1.3
COL4A1P02462 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A1P02462 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
COL4A1P02462 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
COL4A1P02462 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC23.17■■□□□ 1.3
COL4A1P02462 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
COL4A1P02462 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A1P02462 IRX1P1-201ENST00000438849 1838 ntBASIC23.16■■□□□ 1.3
COL4A1P02462 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A1P02462 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC23.16■■□□□ 1.3
COL4A1P02462 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A1P02462 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC23.16■■□□□ 1.3
COL4A1P02462 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC23.16■■□□□ 1.3
COL4A1P02462 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A1P02462 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A1P02462 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC23.16■■□□□ 1.3
COL4A1P02462 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
COL4A1P02462 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A1P02462 SPEG-225ENST00000617028 815 ntTSL 5 BASIC23.16■■□□□ 1.3
COL4A1P02462 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC23.16■■□□□ 1.3
COL4A1P02462 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC23.16■■□□□ 1.3
COL4A1P02462 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC23.16■■□□□ 1.3
COL4A1P02462 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A1P02462 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
COL4A1P02462 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A1P02462 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC23.16■■□□□ 1.3
COL4A1P02462 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A1P02462 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A1P02462 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A1P02462 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC23.16■■□□□ 1.3
COL4A1P02462 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
COL4A1P02462 PP7080-204ENST00000510714 601 ntTSL 3 BASIC23.16■■□□□ 1.3
COL4A1P02462 TK1-205ENST00000590862 642 ntTSL 3 BASIC23.16■■□□□ 1.3
COL4A1P02462 AC011498.5-201ENST00000592027 486 ntBASIC23.16■■□□□ 1.3
COL4A1P02462 AC112497.1-201ENST00000624824 639 ntBASIC23.16■■□□□ 1.3
COL4A1P02462 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A1P02462 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A1P02462 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A1P02462 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A1P02462 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A1P02462 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A1P02462 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
COL4A1P02462 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC23.15■■□□□ 1.3
COL4A1P02462 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC23.15■■□□□ 1.3
COL4A1P02462 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
COL4A1P02462 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
COL4A1P02462 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A1P02462 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC23.15■■□□□ 1.3
COL4A1P02462 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC23.15■■□□□ 1.3
COL4A1P02462 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms