Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HMGN4O00479 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HMGN4O00479 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGN4O00479 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.63■□□□□ 0.41
HMGN4O00479 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HMGN4O00479 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGN4O00479 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGN4O00479 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HMGN4O00479 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.63■□□□□ 0.41
HMGN4O00479 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.62■□□□□ 0.41
HMGN4O00479 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGN4O00479 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGN4O00479 RCC2P6-201ENST00000526625 1557 ntBASIC17.62■□□□□ 0.41
HMGN4O00479 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HMGN4O00479 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGN4O00479 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.62■□□□□ 0.41
HMGN4O00479 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.62■□□□□ 0.41
HMGN4O00479 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
HMGN4O00479 HEIH-201ENST00000623091 1652 ntBASIC17.62■□□□□ 0.41
HMGN4O00479 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGN4O00479 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGN4O00479 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGN4O00479 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HMGN4O00479 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGN4O00479 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGN4O00479 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGN4O00479 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGN4O00479 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.62■□□□□ 0.41
HMGN4O00479 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC17.62■□□□□ 0.41
HMGN4O00479 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGN4O00479 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.62■□□□□ 0.41
HMGN4O00479 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.62■□□□□ 0.41
HMGN4O00479 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HMGN4O00479 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGN4O00479 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.62■□□□□ 0.41
HMGN4O00479 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.62■□□□□ 0.41
HMGN4O00479 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
HMGN4O00479 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
HMGN4O00479 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.62■□□□□ 0.41
HMGN4O00479 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGN4O00479 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGN4O00479 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGN4O00479 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.61■□□□□ 0.41
HMGN4O00479 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
HMGN4O00479 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
HMGN4O00479 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGN4O00479 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HMGN4O00479 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HMGN4O00479 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGN4O00479 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
HMGN4O00479 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGN4O00479 AC091390.4-202ENST00000476426 537 ntBASIC17.61■□□□□ 0.41
HMGN4O00479 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
HMGN4O00479 PRSS44-201ENST00000515154 1146 ntBASIC17.61■□□□□ 0.41
HMGN4O00479 RPPH1-201ENST00000516869 333 ntBASIC17.61■□□□□ 0.41
HMGN4O00479 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.61■□□□□ 0.41
HMGN4O00479 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGN4O00479 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.61■□□□□ 0.41
HMGN4O00479 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
HMGN4O00479 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.61■□□□□ 0.41
HMGN4O00479 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGN4O00479 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGN4O00479 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
HMGN4O00479 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.61■□□□□ 0.41
HMGN4O00479 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
HMGN4O00479 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
HMGN4O00479 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGN4O00479 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.61■□□□□ 0.41
HMGN4O00479 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
HMGN4O00479 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGN4O00479 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGN4O00479 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGN4O00479 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
HMGN4O00479 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGN4O00479 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
HMGN4O00479 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGN4O00479 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.6■□□□□ 0.41
HMGN4O00479 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.6■□□□□ 0.41
HMGN4O00479 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGN4O00479 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGN4O00479 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
HMGN4O00479 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGN4O00479 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGN4O00479 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HMGN4O00479 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGN4O00479 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGN4O00479 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGN4O00479 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.6■□□□□ 0.41
HMGN4O00479 AL353807.1-201ENST00000427475 662 ntBASIC17.6■□□□□ 0.41
HMGN4O00479 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.6■□□□□ 0.41
HMGN4O00479 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.6■□□□□ 0.41
HMGN4O00479 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.6■□□□□ 0.41
HMGN4O00479 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.6■□□□□ 0.41
HMGN4O00479 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.6■□□□□ 0.41
HMGN4O00479 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.6■□□□□ 0.41
HMGN4O00479 AIRN-201ENST00000601203 4374 ntBASIC17.6■□□□□ 0.41
HMGN4O00479 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGN4O00479 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.6■□□□□ 0.41
HMGN4O00479 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGN4O00479 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms