Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 DUX4L26-201ENST00000489078 1255 ntBASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AC110285.5-201ENST00000611501 352 ntBASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC25.54■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 C1QL1P1-201ENST00000568105 661 ntBASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 HTR7P1-201ENST00000538670 1336 ntBASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC25.53■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AC145285.6-201ENST00000604632 637 ntBASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AC007613.1-201ENST00000572811 2597 ntBASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 FZD10-202ENST00000539839 3282 ntBASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC25.52■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms