Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 AC015813.4-201ENST00000610469 179 ntBASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 AC096577.2-201ENST00000611455 153 ntBASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 AC009093.8-201ENST00000641769 292 ntBASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
LIMD1Q9UGP4 OTUD4P1-201ENST00000237841 3067 ntBASIC4.28□□□□□ -1.72
LIMD1Q9UGP4 AC087190.4-201ENST00000574616 8334 ntBASIC4.28□□□□□ -1.72
LIMD1Q9UGP4 RNU6-978P-201ENST00000364371 103 ntBASIC4.28□□□□□ -1.72
LIMD1Q9UGP4 RNU6-1240P-201ENST00000365155 104 ntBASIC4.28□□□□□ -1.72
LIMD1Q9UGP4 MIR491-201ENST00000384877 84 ntBASIC4.28□□□□□ -1.72
LIMD1Q9UGP4 RNA5SP104-201ENST00000410989 118 ntBASIC4.28□□□□□ -1.72
LIMD1Q9UGP4 SNORA57.3-201ENST00000411095 141 ntBASIC4.28□□□□□ -1.72
LIMD1Q9UGP4 AC110768.1-201ENST00000509222 400 ntBASIC4.28□□□□□ -1.72
LIMD1Q9UGP4 AC027419.1-201ENST00000522976 328 ntBASIC4.28□□□□□ -1.72
LIMD1Q9UGP4 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.28□□□□□ -1.72
LIMD1Q9UGP4 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
LIMD1Q9UGP4 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.28□□□□□ -1.72
LIMD1Q9UGP4 AC015720.1-201ENST00000565251 277 ntBASIC4.28□□□□□ -1.72
LIMD1Q9UGP4 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
LIMD1Q9UGP4 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
LIMD1Q9UGP4 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
LIMD1Q9UGP4 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.28□□□□□ -1.72
LIMD1Q9UGP4 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 RNY1P11-201ENST00000363759 113 ntBASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 RNU6-117P-201ENST00000365415 107 ntBASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 RNY4P18-201ENST00000391107 89 ntBASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 RN7SKP156-201ENST00000410308 342 ntBASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 RNA5SP511-201ENST00000410487 115 ntBASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 AL158823.1-201ENST00000418441 478 ntBASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 AC016717.1-201ENST00000448918 286 ntBASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 CYCTP-201ENST00000504253 315 ntBASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 ATP5EP1-201ENST00000510257 156 ntBASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 RNU6-63P-201ENST00000516690 95 ntBASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 SNORA70.24-201ENST00000517233 118 ntBASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 SCARNA11.3-201ENST00000517276 130 ntBASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 MIR3200-201ENST00000580767 85 ntBASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 AL049861.1-201ENST00000603130 150 ntBASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 AC012531.5-201ENST00000611375 151 ntBASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 MIR7151-201ENST00000617477 60 ntBASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 MIR3914-2-201ENST00000637339 95 ntBASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 AL161912.2-201ENST00000565707 3007 ntBASIC4.27□□□□□ -1.73
LIMD1Q9UGP4 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 Z82217.1-201ENST00000625157 8149 ntBASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 RNU6-944P-201ENST00000364023 107 ntBASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 RNU6-136P-201ENST00000384663 107 ntBASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 SNORD66.1-201ENST00000391230 76 ntBASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 MIR1911-201ENST00000410783 80 ntBASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 SNORA74C-2-201ENST00000411179 201 ntBASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 AC006011.1-201ENST00000442758 349 ntBASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 RPL39P40-201ENST00000445481 146 ntBASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 AC090515.1-201ENST00000465295 476 ntBASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 RPS27P22-201ENST00000478056 241 ntBASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 RNU1-95P-201ENST00000516357 160 ntBASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 RNU1-128P-201ENST00000516704 160 ntBASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 Y_RNA.709-201ENST00000516952 92 ntBASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 MIR4474-201ENST00000579189 78 ntBASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 AC131055.1-201ENST00000584626 316 ntBASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.26□□□□□ -1.73
LIMD1Q9UGP4 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 RNU1-15P-201ENST00000353977 144 ntBASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 SNORD18B-201ENST00000365659 72 ntBASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 RNU6-429P-201ENST00000384582 108 ntBASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 MIR34B-201ENST00000385076 84 ntBASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms