Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RNU6-1048P-201ENST00000364054 107 ntBASIC4.16□□□□□ -1.74
USP3Q9Y6I4 MIR1251-201ENST00000408552 70 ntBASIC4.16□□□□□ -1.74
USP3Q9Y6I4 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC4.16□□□□□ -1.74
USP3Q9Y6I4 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC4.16□□□□□ -1.74
USP3Q9Y6I4 RNU7-141P-201ENST00000459304 62 ntBASIC4.16□□□□□ -1.74
USP3Q9Y6I4 SCARNA8-201ENST00000515924 131 ntBASIC4.16□□□□□ -1.74
USP3Q9Y6I4 RNU1-117P-201ENST00000517041 158 ntBASIC4.16□□□□□ -1.74
USP3Q9Y6I4 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC4.16□□□□□ -1.74
USP3Q9Y6I4 AL606490.9-201ENST00000603331 271 ntBASIC4.16□□□□□ -1.74
USP3Q9Y6I4 AC006133.1-201ENST00000617106 264 ntBASIC4.16□□□□□ -1.74
USP3Q9Y6I4 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.16□□□□□ -1.74
USP3Q9Y6I4 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP3Q9Y6I4 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP3Q9Y6I4 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP3Q9Y6I4 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP3Q9Y6I4 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.16□□□□□ -1.74
USP3Q9Y6I4 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
USP3Q9Y6I4 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
USP3Q9Y6I4 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.16□□□□□ -1.74
USP3Q9Y6I4 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
USP3Q9Y6I4 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.74
USP3Q9Y6I4 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
USP3Q9Y6I4 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.74
USP3Q9Y6I4 RNU6-529P-201ENST00000363383 104 ntBASIC4.15□□□□□ -1.75
USP3Q9Y6I4 SNORA20-201ENST00000384662 132 ntBASIC4.15□□□□□ -1.75
USP3Q9Y6I4 MIR147B-201ENST00000390185 80 ntBASIC4.15□□□□□ -1.75
USP3Q9Y6I4 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
USP3Q9Y6I4 RNU4-43P-201ENST00000410628 137 ntBASIC4.15□□□□□ -1.75
USP3Q9Y6I4 RNA5SP104-201ENST00000410989 118 ntBASIC4.15□□□□□ -1.75
USP3Q9Y6I4 AC004866.1-201ENST00000411748 78 ntBASIC4.15□□□□□ -1.75
USP3Q9Y6I4 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.15□□□□□ -1.75
USP3Q9Y6I4 AC145146.1-201ENST00000496370 254 ntBASIC4.15□□□□□ -1.75
USP3Q9Y6I4 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.15□□□□□ -1.75
USP3Q9Y6I4 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.15□□□□□ -1.75
USP3Q9Y6I4 RNU2-58P-201ENST00000516403 183 ntBASIC4.15□□□□□ -1.75
USP3Q9Y6I4 RNU2-44P-201ENST00000516795 194 ntBASIC4.15□□□□□ -1.75
USP3Q9Y6I4 RNU6-1234P-201ENST00000516877 103 ntBASIC4.15□□□□□ -1.75
USP3Q9Y6I4 AC106785.1-201ENST00000565935 262 ntBASIC4.15□□□□□ -1.75
USP3Q9Y6I4 U7.2-201ENST00000607576 63 ntBASIC4.15□□□□□ -1.75
USP3Q9Y6I4 AC069200.1-201ENST00000609511 323 ntBASIC4.15□□□□□ -1.75
USP3Q9Y6I4 AC011603.4-201ENST00000611325 277 ntBASIC4.15□□□□□ -1.75
USP3Q9Y6I4 MIR6844-201ENST00000637122 62 ntBASIC4.15□□□□□ -1.75
USP3Q9Y6I4 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
USP3Q9Y6I4 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
USP3Q9Y6I4 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.75
USP3Q9Y6I4 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.75
USP3Q9Y6I4 AL159152.1-201ENST00000635019 2587 ntBASIC4.14□□□□□ -1.75
USP3Q9Y6I4 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
USP3Q9Y6I4 AK9-203ENST00000368948 2478 ntTSL 5 BASIC4.14□□□□□ -1.75
USP3Q9Y6I4 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
USP3Q9Y6I4 AC068700.1-201ENST00000565862 3754 ntBASIC4.14□□□□□ -1.75
USP3Q9Y6I4 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
USP3Q9Y6I4 MIR448-201ENST00000362131 111 ntBASIC4.14□□□□□ -1.75
USP3Q9Y6I4 RNU6-655P-201ENST00000362858 107 ntBASIC4.14□□□□□ -1.75
USP3Q9Y6I4 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC4.14□□□□□ -1.75
USP3Q9Y6I4 SNORA18.2-201ENST00000383865 132 ntBASIC4.14□□□□□ -1.75
USP3Q9Y6I4 SNORA67.2-201ENST00000384300 149 ntBASIC4.14□□□□□ -1.75
USP3Q9Y6I4 SNORA48.5-201ENST00000391143 135 ntBASIC4.14□□□□□ -1.75
USP3Q9Y6I4 AC010154.1-201ENST00000425857 269 ntBASIC4.14□□□□□ -1.75
USP3Q9Y6I4 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC4.14□□□□□ -1.75
USP3Q9Y6I4 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC4.14□□□□□ -1.75
USP3Q9Y6I4 RPS27P1-201ENST00000450552 247 ntBASIC4.14□□□□□ -1.75
USP3Q9Y6I4 NDUFS5P3-201ENST00000450668 321 ntBASIC4.14□□□□□ -1.75
USP3Q9Y6I4 AC245047.8-201ENST00000456455 284 ntBASIC4.14□□□□□ -1.75
USP3Q9Y6I4 RNU7-23P-201ENST00000459465 62 ntBASIC4.14□□□□□ -1.75
USP3Q9Y6I4 RNU6-453P-201ENST00000516819 85 ntBASIC4.14□□□□□ -1.75
USP3Q9Y6I4 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.14□□□□□ -1.75
USP3Q9Y6I4 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.14□□□□□ -1.75
USP3Q9Y6I4 AC025754.2-201ENST00000606491 432 ntBASIC4.14□□□□□ -1.75
USP3Q9Y6I4 Z82217.1-201ENST00000625157 8149 ntBASIC4.14□□□□□ -1.75
USP3Q9Y6I4 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.14□□□□□ -1.75
USP3Q9Y6I4 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
USP3Q9Y6I4 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
USP3Q9Y6I4 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.13□□□□□ -1.75
USP3Q9Y6I4 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP3Q9Y6I4 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP3Q9Y6I4 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP3Q9Y6I4 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.13□□□□□ -1.75
USP3Q9Y6I4 AC007496.3-201ENST00000624987 3443 ntBASIC4.13□□□□□ -1.75
USP3Q9Y6I4 AC069528.2-201ENST00000624849 1991 ntBASIC4.13□□□□□ -1.75
USP3Q9Y6I4 Y_RNA.40-201ENST00000362645 93 ntBASIC4.13□□□□□ -1.75
USP3Q9Y6I4 Y_RNA.229-201ENST00000364347 113 ntBASIC4.13□□□□□ -1.75
USP3Q9Y6I4 RNU6-407P-201ENST00000365280 104 ntBASIC4.13□□□□□ -1.75
USP3Q9Y6I4 Y_RNA.393-201ENST00000383936 102 ntBASIC4.13□□□□□ -1.75
USP3Q9Y6I4 AL606845.1-201ENST00000404881 255 ntBASIC4.13□□□□□ -1.75
USP3Q9Y6I4 RNU2-52P-201ENST00000410680 190 ntBASIC4.13□□□□□ -1.75
USP3Q9Y6I4 RNA5SP39-201ENST00000411245 120 ntBASIC4.13□□□□□ -1.75
USP3Q9Y6I4 AC023141.4-201ENST00000412031 328 ntBASIC4.13□□□□□ -1.75
USP3Q9Y6I4 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.13□□□□□ -1.75
USP3Q9Y6I4 snoU13.28-201ENST00000459235 104 ntBASIC4.13□□□□□ -1.75
USP3Q9Y6I4 RPS26P15-201ENST00000488067 348 ntBASIC4.13□□□□□ -1.75
USP3Q9Y6I4 AC026402.1-201ENST00000513642 170 ntBASIC4.13□□□□□ -1.75
USP3Q9Y6I4 RNU6-659P-201ENST00000516454 104 ntBASIC4.13□□□□□ -1.75
USP3Q9Y6I4 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.13□□□□□ -1.75
USP3Q9Y6I4 AP001328.1-201ENST00000528550 176 ntBASIC4.13□□□□□ -1.75
USP3Q9Y6I4 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC4.13□□□□□ -1.75
USP3Q9Y6I4 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.13□□□□□ -1.75
USP3Q9Y6I4 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.13□□□□□ -1.75
USP3Q9Y6I4 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP3Q9Y6I4 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 142.9 ms