Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LRCH3Q96II8 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
LRCH3Q96II8 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.81□□□□□ -1.64
LRCH3Q96II8 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LRCH3Q96II8 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
LRCH3Q96II8 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.81□□□□□ -1.64
LRCH3Q96II8 RNU6-1134P-201ENST00000365156 101 ntBASIC4.81□□□□□ -1.64
LRCH3Q96II8 RNU6-972P-201ENST00000391208 107 ntBASIC4.81□□□□□ -1.64
LRCH3Q96II8 SNORA19.1-201ENST00000410656 129 ntBASIC4.81□□□□□ -1.64
LRCH3Q96II8 HMGN2P20-201ENST00000437531 273 ntBASIC4.81□□□□□ -1.64
LRCH3Q96II8 RPL36AP21-201ENST00000490372 323 ntBASIC4.81□□□□□ -1.64
LRCH3Q96II8 COX6CP6-201ENST00000490840 228 ntBASIC4.81□□□□□ -1.64
LRCH3Q96II8 SNORD77.4-201ENST00000516158 81 ntBASIC4.81□□□□□ -1.64
LRCH3Q96II8 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.81□□□□□ -1.64
LRCH3Q96II8 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.81□□□□□ -1.64
LRCH3Q96II8 AC105245.1-201ENST00000581934 244 ntBASIC4.81□□□□□ -1.64
LRCH3Q96II8 AL606490.9-201ENST00000603331 271 ntBASIC4.81□□□□□ -1.64
LRCH3Q96II8 Y_RNA.818-201ENST00000618813 71 ntBASIC4.81□□□□□ -1.64
LRCH3Q96II8 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
LRCH3Q96II8 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LRCH3Q96II8 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LRCH3Q96II8 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.8□□□□□ -1.64
LRCH3Q96II8 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
LRCH3Q96II8 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LRCH3Q96II8 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LRCH3Q96II8 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC4.8□□□□□ -1.64
LRCH3Q96II8 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LRCH3Q96II8 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
LRCH3Q96II8 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LRCH3Q96II8 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LRCH3Q96II8 Y_RNA.221-201ENST00000364248 96 ntBASIC4.8□□□□□ -1.64
LRCH3Q96II8 U3.15-201ENST00000365398 212 ntBASIC4.8□□□□□ -1.64
LRCH3Q96II8 AL355796.1-201ENST00000406706 323 ntBASIC4.8□□□□□ -1.64
LRCH3Q96II8 AL121890.1-201ENST00000435457 205 ntBASIC4.8□□□□□ -1.64
LRCH3Q96II8 AL356535.1-201ENST00000440335 398 ntBASIC4.8□□□□□ -1.64
LRCH3Q96II8 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.8□□□□□ -1.64
LRCH3Q96II8 PTMAP3-201ENST00000447474 330 ntBASIC4.8□□□□□ -1.64
LRCH3Q96II8 RPS29P20-201ENST00000489592 171 ntBASIC4.8□□□□□ -1.64
LRCH3Q96II8 RN7SL691P-201ENST00000494487 301 ntBASIC4.8□□□□□ -1.64
LRCH3Q96II8 RPL30P5-201ENST00000494923 336 ntBASIC4.8□□□□□ -1.64
LRCH3Q96II8 AC026421.1-201ENST00000519101 163 ntBASIC4.8□□□□□ -1.64
LRCH3Q96II8 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.8□□□□□ -1.64
LRCH3Q96II8 CYCSP40-201ENST00000575927 294 ntBASIC4.8□□□□□ -1.64
LRCH3Q96II8 AL590808.1-201ENST00000618696 141 ntBASIC4.8□□□□□ -1.64
LRCH3Q96II8 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.8□□□□□ -1.64
LRCH3Q96II8 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
LRCH3Q96II8 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
LRCH3Q96II8 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LRCH3Q96II8 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.79□□□□□ -1.64
LRCH3Q96II8 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LRCH3Q96II8 SNORA68.2-201ENST00000391263 128 ntBASIC4.79□□□□□ -1.64
LRCH3Q96II8 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.79□□□□□ -1.64
LRCH3Q96II8 AL591623.2-201ENST00000449978 222 ntBASIC4.79□□□□□ -1.64
LRCH3Q96II8 ABCF2P2-201ENST00000450549 296 ntBASIC4.79□□□□□ -1.64
LRCH3Q96II8 RNA5SP236-201ENST00000516169 116 ntBASIC4.79□□□□□ -1.64
LRCH3Q96II8 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.79□□□□□ -1.64
LRCH3Q96II8 AL159152.1-201ENST00000635019 2587 ntBASIC4.79□□□□□ -1.64
LRCH3Q96II8 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LRCH3Q96II8 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.78□□□□□ -1.64
LRCH3Q96II8 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LRCH3Q96II8 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LRCH3Q96II8 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LRCH3Q96II8 ASNSP1-201ENST00000518311 1939 ntBASIC4.78□□□□□ -1.64
LRCH3Q96II8 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.78□□□□□ -1.64
LRCH3Q96II8 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
LRCH3Q96II8 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.78□□□□□ -1.64
LRCH3Q96II8 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LRCH3Q96II8 NEAT1-202ENST00000501122 22743 ntBASIC4.78□□□□□ -1.64
LRCH3Q96II8 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
LRCH3Q96II8 SDHCP2-201ENST00000398565 501 ntBASIC4.78□□□□□ -1.64
LRCH3Q96II8 AL049873.1-201ENST00000480540 376 ntBASIC4.78□□□□□ -1.64
LRCH3Q96II8 RNA5SP49-201ENST00000516450 115 ntBASIC4.78□□□□□ -1.64
LRCH3Q96II8 RN7SKP289-201ENST00000517244 295 ntBASIC4.78□□□□□ -1.64
LRCH3Q96II8 AC026403.1-201ENST00000518938 295 ntBASIC4.78□□□□□ -1.64
LRCH3Q96II8 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.78□□□□□ -1.64
LRCH3Q96II8 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.78□□□□□ -1.64
LRCH3Q96II8 AC021739.1-201ENST00000559631 174 ntBASIC4.78□□□□□ -1.64
LRCH3Q96II8 MIR8069-1-201ENST00000616627 86 ntBASIC4.78□□□□□ -1.64
LRCH3Q96II8 uc_338.4-201ENST00000616635 176 ntBASIC4.78□□□□□ -1.64
LRCH3Q96II8 MIR8069-2-201ENST00000621412 86 ntBASIC4.78□□□□□ -1.64
LRCH3Q96II8 MIR6852-201ENST00000621699 66 ntBASIC4.78□□□□□ -1.64
LRCH3Q96II8 MIR2052-201ENST00000636055 55 ntBASIC4.78□□□□□ -1.64
LRCH3Q96II8 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.78□□□□□ -1.64
LRCH3Q96II8 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LRCH3Q96II8 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
LRCH3Q96II8 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LRCH3Q96II8 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
LRCH3Q96II8 AC125257.1-201ENST00000560400 2930 ntBASIC4.77□□□□□ -1.65
LRCH3Q96II8 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
LRCH3Q96II8 RNU4-15P-201ENST00000362613 141 ntBASIC4.77□□□□□ -1.65
LRCH3Q96II8 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.77□□□□□ -1.65
LRCH3Q96II8 Y_RNA.466-201ENST00000384294 113 ntBASIC4.77□□□□□ -1.65
LRCH3Q96II8 MIR493-201ENST00000385254 89 ntBASIC4.77□□□□□ -1.65
LRCH3Q96II8 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC4.77□□□□□ -1.65
LRCH3Q96II8 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.77□□□□□ -1.65
LRCH3Q96II8 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.77□□□□□ -1.65
LRCH3Q96II8 AL365205.2-201ENST00000594586 68 ntBASIC4.77□□□□□ -1.65
LRCH3Q96II8 PCNP-208ENST00000627393 136 ntTSL 2 BASIC4.77□□□□□ -1.65
LRCH3Q96II8 MIR6715B-201ENST00000637172 77 ntBASIC4.77□□□□□ -1.65
LRCH3Q96II8 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms