Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
COL4A3BPQ9Y5P4 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A3BPQ9Y5P4 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A3BPQ9Y5P4 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A3BPQ9Y5P4 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
COL4A3BPQ9Y5P4 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A3BPQ9Y5P4 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A3BPQ9Y5P4 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC21.2■□□□□ 0.98
COL4A3BPQ9Y5P4 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A3BPQ9Y5P4 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC21.2■□□□□ 0.98
COL4A3BPQ9Y5P4 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A3BPQ9Y5P4 P4HB-223ENST00000576390 439 ntTSL 4 BASIC21.2■□□□□ 0.98
COL4A3BPQ9Y5P4 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A3BPQ9Y5P4 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
COL4A3BPQ9Y5P4 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.2■□□□□ 0.98
COL4A3BPQ9Y5P4 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC21.2■□□□□ 0.98
COL4A3BPQ9Y5P4 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
COL4A3BPQ9Y5P4 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A3BPQ9Y5P4 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A3BPQ9Y5P4 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A3BPQ9Y5P4 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 AC113347.1-201ENST00000413321 391 ntBASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 TSPY23P-201ENST00000440136 739 ntBASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 SLC25A3P1-201ENST00000443844 931 ntBASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 CKBP1-201ENST00000565489 1086 ntBASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 CLN6-221ENST00000637494 765 ntTSL 5 BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL4A3BPQ9Y5P4 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 IRX1P1-201ENST00000438849 1838 ntBASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 ECEL1P2-202ENST00000465689 757 ntBASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 AC128688.1-201ENST00000487626 519 ntBASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL4A3BPQ9Y5P4 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 FP475955.4-201ENST00000623131 1990 ntBASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 INGX-201ENST00000359239 846 ntBASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 AC005521.1-201ENST00000393351 872 ntBASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 RN7SL850P-201ENST00000579959 291 ntBASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 KRT8P11-201ENST00000409686 1436 ntBASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 FEM1AP3-201ENST00000403722 1741 ntBASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms