Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CTDP1Q9Y5B0 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 NT5C-210ENST00000582160 860 ntTSL 2 BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 AL121956.5-201ENST00000625261 221 ntBASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTDP1Q9Y5B0 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CTDP1Q9Y5B0 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CTDP1Q9Y5B0 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
CTDP1Q9Y5B0 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.89■■□□□ 1.1
CTDP1Q9Y5B0 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
CTDP1Q9Y5B0 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21.89■■□□□ 1.09
CTDP1Q9Y5B0 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CTDP1Q9Y5B0 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC21.89■■□□□ 1.09
CTDP1Q9Y5B0 MIR4674-201ENST00000582457 87 ntBASIC21.89■■□□□ 1.09
CTDP1Q9Y5B0 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
CTDP1Q9Y5B0 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC21.89■■□□□ 1.09
CTDP1Q9Y5B0 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC21.89■■□□□ 1.09
CTDP1Q9Y5B0 AC008622.2-201ENST00000617006 1229 ntBASIC21.89■■□□□ 1.09
CTDP1Q9Y5B0 AP000550.4-202ENST00000639755 178 ntBASIC21.89■■□□□ 1.09
CTDP1Q9Y5B0 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.89■■□□□ 1.09
CTDP1Q9Y5B0 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.89■■□□□ 1.09
CTDP1Q9Y5B0 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
CTDP1Q9Y5B0 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CTDP1Q9Y5B0 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CTDP1Q9Y5B0 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC21.89■■□□□ 1.09
CTDP1Q9Y5B0 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.09
CTDP1Q9Y5B0 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
CTDP1Q9Y5B0 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CTDP1Q9Y5B0 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.88■■□□□ 1.09
CTDP1Q9Y5B0 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CTDP1Q9Y5B0 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC21.88■■□□□ 1.09
CTDP1Q9Y5B0 PCDHAC2-203ENST00000615316 3011 ntBASIC21.88■■□□□ 1.09
CTDP1Q9Y5B0 Z82202.1-201ENST00000623446 1880 ntBASIC21.88■■□□□ 1.09
CTDP1Q9Y5B0 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
CTDP1Q9Y5B0 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CTDP1Q9Y5B0 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CTDP1Q9Y5B0 ISCU-203ENST00000431221 799 ntTSL 2 BASIC21.88■■□□□ 1.09
CTDP1Q9Y5B0 CR769767.2-201ENST00000622735 460 ntBASIC21.88■■□□□ 1.09
CTDP1Q9Y5B0 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.88■■□□□ 1.09
CTDP1Q9Y5B0 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
CTDP1Q9Y5B0 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CTDP1Q9Y5B0 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CTDP1Q9Y5B0 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 PCED1CP-201ENST00000419887 785 ntBASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 GCSHP2-201ENST00000560971 527 ntBASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms