Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 POU5F1P3-201ENST00000428824 1078 ntBASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 Z85996.1-201ENST00000494644 937 ntBASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMA1Q9UHB6 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.73■□□□□ 0.91
LIMA1Q9UHB6 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 AC068587.9-201ENST00000641814 219 ntBASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 MTMR9LP-203ENST00000426597 1545 ntBASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.72■□□□□ 0.91
LIMA1Q9UHB6 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 NOC2LP2-201ENST00000407594 1944 ntBASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMA1Q9UHB6 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms