Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.23■□□□□ 0.67
COL25A1Q9BXS0 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL25A1Q9BXS0 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL25A1Q9BXS0 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.23■□□□□ 0.67
COL25A1Q9BXS0 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 AL162377.1-201ENST00000618844 1793 ntBASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 AC009947.1-201ENST00000444350 727 ntBASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 AJ011932.1-201ENST00000621707 465 ntBASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.22■□□□□ 0.67
COL25A1Q9BXS0 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 CREM-210ENST00000374721 2020 ntTSL 5 BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 POLD4-211ENST00000539074 714 ntTSL 3 BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 RPL28-205ENST00000558131 444 ntTSL 5 BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 MIR6799-201ENST00000620297 69 ntBASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 C20orf181-201ENST00000623918 480 ntBASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL25A1Q9BXS0 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL25A1Q9BXS0 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.2■□□□□ 0.66
COL25A1Q9BXS0 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL25A1Q9BXS0 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.2■□□□□ 0.66
COL25A1Q9BXS0 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL25A1Q9BXS0 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL25A1Q9BXS0 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL25A1Q9BXS0 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL25A1Q9BXS0 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL25A1Q9BXS0 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL25A1Q9BXS0 RCN1P2-201ENST00000398357 915 ntBASIC19.2■□□□□ 0.66
COL25A1Q9BXS0 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.2■□□□□ 0.66
COL25A1Q9BXS0 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.2■□□□□ 0.66
COL25A1Q9BXS0 DUT-210ENST00000559935 569 ntTSL 3 BASIC19.2■□□□□ 0.66
COL25A1Q9BXS0 AC004449.1-201ENST00000564240 433 ntBASIC19.2■□□□□ 0.66
COL25A1Q9BXS0 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.2■□□□□ 0.66
COL25A1Q9BXS0 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
COL25A1Q9BXS0 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
COL25A1Q9BXS0 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.19■□□□□ 0.66
COL25A1Q9BXS0 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.19■□□□□ 0.66
COL25A1Q9BXS0 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
COL25A1Q9BXS0 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
COL25A1Q9BXS0 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL25A1Q9BXS0 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.19■□□□□ 0.66
COL25A1Q9BXS0 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL25A1Q9BXS0 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.19■□□□□ 0.66
COL25A1Q9BXS0 HEIH-201ENST00000623091 1652 ntBASIC19.19■□□□□ 0.66
COL25A1Q9BXS0 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL25A1Q9BXS0 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL25A1Q9BXS0 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 AP002414.3-201ENST00000589352 1468 ntBASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 AC105339.3-201ENST00000560043 636 ntBASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 MIR3180-5-201ENST00000583743 153 ntBASIC19.18■□□□□ 0.66
COL25A1Q9BXS0 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms