Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PAAF1Q9BRP4 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PAAF1Q9BRP4 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
PAAF1Q9BRP4 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 AC024243.1-201ENST00000609234 778 ntBASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PAAF1Q9BRP4 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 IRX1P1-201ENST00000438849 1838 ntBASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 SPDYE13P-201ENST00000445314 798 ntBASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 MCCD1P1-208ENST00000445732 328 ntBASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PAAF1Q9BRP4 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 IER3-202ENST00000376377 1350 ntBASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 MIR3180-5-201ENST00000583743 153 ntBASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 DBP-204ENST00000599385 709 ntTSL 3 BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 AC116407.4-201ENST00000623319 1061 ntBASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PAAF1Q9BRP4 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 AC092597.1-201ENST00000487352 616 ntBASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms