Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PKP4Q99569 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PKP4Q99569 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.47■□□□□ 0.55
PKP4Q99569 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
PKP4Q99569 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.47■□□□□ 0.55
PKP4Q99569 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
PKP4Q99569 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PKP4Q99569 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.47■□□□□ 0.55
PKP4Q99569 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PKP4Q99569 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PKP4Q99569 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.47■□□□□ 0.55
PKP4Q99569 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.47■□□□□ 0.55
PKP4Q99569 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PKP4Q99569 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PKP4Q99569 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
PKP4Q99569 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
PKP4Q99569 AC096733.2-201ENST00000609937 1394 ntBASIC18.46■□□□□ 0.55
PKP4Q99569 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.46■□□□□ 0.55
PKP4Q99569 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PKP4Q99569 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.46■□□□□ 0.55
PKP4Q99569 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PKP4Q99569 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PKP4Q99569 MFAP1P1-201ENST00000442257 1255 ntBASIC18.46■□□□□ 0.55
PKP4Q99569 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.46■□□□□ 0.55
PKP4Q99569 TSPY15P-201ENST00000457163 923 ntBASIC18.46■□□□□ 0.55
PKP4Q99569 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
PKP4Q99569 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.46■□□□□ 0.55
PKP4Q99569 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
PKP4Q99569 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.46■□□□□ 0.55
PKP4Q99569 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.46■□□□□ 0.55
PKP4Q99569 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.46■□□□□ 0.55
PKP4Q99569 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PKP4Q99569 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PKP4Q99569 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PKP4Q99569 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PKP4Q99569 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.46■□□□□ 0.54
PKP4Q99569 AC079598.2-202ENST00000546624 1451 ntBASIC18.46■□□□□ 0.54
PKP4Q99569 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
PKP4Q99569 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.45■□□□□ 0.54
PKP4Q99569 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PKP4Q99569 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.45■□□□□ 0.54
PKP4Q99569 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
PKP4Q99569 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
PKP4Q99569 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PKP4Q99569 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.45■□□□□ 0.54
PKP4Q99569 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.45■□□□□ 0.54
PKP4Q99569 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PKP4Q99569 UNC93B2-201ENST00000285383 730 ntBASIC18.45■□□□□ 0.54
PKP4Q99569 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PKP4Q99569 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PKP4Q99569 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.45■□□□□ 0.54
PKP4Q99569 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
PKP4Q99569 CRYGFP-201ENST00000418459 633 ntBASIC18.45■□□□□ 0.54
PKP4Q99569 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.45■□□□□ 0.54
PKP4Q99569 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.45■□□□□ 0.54
PKP4Q99569 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PKP4Q99569 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.45■□□□□ 0.54
PKP4Q99569 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.45■□□□□ 0.54
PKP4Q99569 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.45■□□□□ 0.54
PKP4Q99569 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.45■□□□□ 0.54
PKP4Q99569 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PKP4Q99569 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
PKP4Q99569 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PKP4Q99569 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PKP4Q99569 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
PKP4Q99569 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PKP4Q99569 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PKP4Q99569 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PKP4Q99569 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PKP4Q99569 AC006333.2-201ENST00000607957 2099 ntBASIC18.45■□□□□ 0.54
PKP4Q99569 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
PKP4Q99569 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.45■□□□□ 0.54
PKP4Q99569 AC120498.9-201ENST00000339021 3867 ntBASIC18.45■□□□□ 0.54
PKP4Q99569 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
PKP4Q99569 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKP4Q99569 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKP4Q99569 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.44■□□□□ 0.54
PKP4Q99569 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKP4Q99569 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
PKP4Q99569 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKP4Q99569 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
PKP4Q99569 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKP4Q99569 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.44■□□□□ 0.54
PKP4Q99569 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKP4Q99569 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.44■□□□□ 0.54
PKP4Q99569 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.44■□□□□ 0.54
PKP4Q99569 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.44■□□□□ 0.54
PKP4Q99569 AP000525.1-201ENST00000608286 694 ntBASIC18.44■□□□□ 0.54
PKP4Q99569 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKP4Q99569 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
PKP4Q99569 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKP4Q99569 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.44■□□□□ 0.54
PKP4Q99569 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PKP4Q99569 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKP4Q99569 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PKP4Q99569 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
PKP4Q99569 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.43■□□□□ 0.54
PKP4Q99569 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.43■□□□□ 0.54
PKP4Q99569 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PKP4Q99569 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms