Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC42Q96M95 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC42Q96M95 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC42Q96M95 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC42Q96M95 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC42Q96M95 NCF1B-203ENST00000435988 1254 ntBASIC20.47■□□□□ 0.87
CCDC42Q96M95 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC42Q96M95 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.47■□□□□ 0.87
CCDC42Q96M95 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.47■□□□□ 0.87
CCDC42Q96M95 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC42Q96M95 SOX15-203ENST00000570788 1093 ntBASIC20.47■□□□□ 0.87
CCDC42Q96M95 AC008687.6-201ENST00000596318 630 ntBASIC20.47■□□□□ 0.87
CCDC42Q96M95 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.47■□□□□ 0.87
CCDC42Q96M95 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CCDC42Q96M95 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC42Q96M95 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC42Q96M95 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC42Q96M95 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC42Q96M95 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC42Q96M95 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC42Q96M95 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC42Q96M95 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC42Q96M95 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CCDC42Q96M95 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC42Q96M95 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CCDC42Q96M95 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC42Q96M95 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC42Q96M95 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
CCDC42Q96M95 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC42Q96M95 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC42Q96M95 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC42Q96M95 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC42Q96M95 AL354751.1-201ENST00000412768 1863 ntBASIC20.46■□□□□ 0.87
CCDC42Q96M95 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC42Q96M95 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC42Q96M95 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC42Q96M95 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.46■□□□□ 0.87
CCDC42Q96M95 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC42Q96M95 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC42Q96M95 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.46■□□□□ 0.87
CCDC42Q96M95 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC20.46■□□□□ 0.87
CCDC42Q96M95 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.46■□□□□ 0.87
CCDC42Q96M95 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC42Q96M95 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC42Q96M95 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC42Q96M95 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC42Q96M95 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.46■□□□□ 0.87
CCDC42Q96M95 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CCDC42Q96M95 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC42Q96M95 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
CCDC42Q96M95 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC42Q96M95 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC42Q96M95 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC42Q96M95 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC42Q96M95 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
CCDC42Q96M95 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC42Q96M95 TSPY21P-201ENST00000433481 731 ntBASIC20.45■□□□□ 0.86
CCDC42Q96M95 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC42Q96M95 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC42Q96M95 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC42Q96M95 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC42Q96M95 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.45■□□□□ 0.86
CCDC42Q96M95 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
CCDC42Q96M95 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CCDC42Q96M95 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC42Q96M95 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC42Q96M95 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC42Q96M95 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC42Q96M95 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC42Q96M95 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CCDC42Q96M95 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CCDC42Q96M95 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC42Q96M95 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC42Q96M95 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CCDC42Q96M95 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC42Q96M95 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC42Q96M95 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC42Q96M95 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CCDC42Q96M95 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC42Q96M95 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC42Q96M95 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC42Q96M95 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC42Q96M95 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC42Q96M95 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.44■□□□□ 0.86
CCDC42Q96M95 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC42Q96M95 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC42Q96M95 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CCDC42Q96M95 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC42Q96M95 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
CCDC42Q96M95 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC42Q96M95 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC42Q96M95 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC42Q96M95 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC42Q96M95 AC005332.8-201ENST00000622750 2735 ntBASIC20.44■□□□□ 0.86
CCDC42Q96M95 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC42Q96M95 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC42Q96M95 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC42Q96M95 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC42Q96M95 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CCDC42Q96M95 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms