Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 AC064862.7-201ENST00000604520 867 ntBASIC20.59■□□□□ 0.89
TRIM43Q96BQ3 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC20.59■□□□□ 0.89
TRIM43Q96BQ3 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
TRIM43Q96BQ3 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.59■□□□□ 0.89
TRIM43Q96BQ3 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
TRIM43Q96BQ3 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM43Q96BQ3 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM43Q96BQ3 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
TRIM43Q96BQ3 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.59■□□□□ 0.89
TRIM43Q96BQ3 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM43Q96BQ3 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
TRIM43Q96BQ3 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 KRT18P58-201ENST00000527480 1120 ntBASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 AL773604.1-201ENST00000617417 272 ntBASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.58■□□□□ 0.89
TRIM43Q96BQ3 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.58■□□□□ 0.88
TRIM43Q96BQ3 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM43Q96BQ3 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM43Q96BQ3 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 KRT8P3-201ENST00000519669 1449 ntBASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
TRIM43Q96BQ3 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 MIR1233-2-201ENST00000408138 82 ntBASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 MIR1233-1-201ENST00000408722 82 ntBASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 FAM197Y8-203ENST00000450145 560 ntBASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 POLD2P1-201ENST00000511220 997 ntBASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 AP005901.3-202ENST00000581653 237 ntBASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 AC010240.3-201ENST00000607688 395 ntBASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 NSUN5P1-202ENST00000421140 1535 ntBASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 NSUN5P2-203ENST00000457352 1529 ntBASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.56■□□□□ 0.88
TRIM43Q96BQ3 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM43Q96BQ3 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
TRIM43Q96BQ3 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
TRIM43Q96BQ3 AC091607.1-201ENST00000490318 1060 ntBASIC20.55■□□□□ 0.88
TRIM43Q96BQ3 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
TRIM43Q96BQ3 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC20.55■□□□□ 0.88
TRIM43Q96BQ3 AC104390.1-201ENST00000555663 520 ntBASIC20.55■□□□□ 0.88
TRIM43Q96BQ3 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.55■□□□□ 0.88
TRIM43Q96BQ3 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.55■□□□□ 0.88
TRIM43Q96BQ3 AL592071.1-201ENST00000611956 408 ntBASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms