Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
LMX1AQ8TE12 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 AC034232.1-201ENST00000506026 1064 ntBASIC18.46■□□□□ 0.55
LMX1AQ8TE12 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1AQ8TE12 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.46■□□□□ 0.54
LMX1AQ8TE12 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 RASA4DP-201ENST00000460726 1199 ntBASIC18.45■□□□□ 0.54
LMX1AQ8TE12 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 MIR3180-5-201ENST00000583743 153 ntBASIC18.45■□□□□ 0.54
LMX1AQ8TE12 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 AC069148.1-201ENST00000608741 768 ntBASIC18.45■□□□□ 0.54
LMX1AQ8TE12 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 TREX1-205ENST00000625293 1783 ntBASIC18.45■□□□□ 0.54
LMX1AQ8TE12 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LMX1AQ8TE12 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 KRT8P3-201ENST00000519669 1449 ntBASIC18.44■□□□□ 0.54
LMX1AQ8TE12 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.44■□□□□ 0.54
LMX1AQ8TE12 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms