Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC23.67■■□□□ 1.38
UBE3BQ7Z3V4 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC23.67■■□□□ 1.38
UBE3BQ7Z3V4 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC23.67■■□□□ 1.38
UBE3BQ7Z3V4 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
UBE3BQ7Z3V4 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC23.67■■□□□ 1.38
UBE3BQ7Z3V4 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
UBE3BQ7Z3V4 AL032819.2-201ENST00000624543 2162 ntBASIC23.67■■□□□ 1.38
UBE3BQ7Z3V4 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 AC141586.3-201ENST00000562166 1838 ntBASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 ISCU-203ENST00000431221 799 ntTSL 2 BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 FEM1AP3-201ENST00000403722 1741 ntBASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
UBE3BQ7Z3V4 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 AP000523.1-201ENST00000398242 1049 ntBASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 UBQLN4P1-201ENST00000461599 1801 ntBASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
UBE3BQ7Z3V4 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
UBE3BQ7Z3V4 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.38
UBE3BQ7Z3V4 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.38
UBE3BQ7Z3V4 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
UBE3BQ7Z3V4 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
UBE3BQ7Z3V4 MCCD1P1-208ENST00000445732 328 ntBASIC23.64■■□□□ 1.37
UBE3BQ7Z3V4 SNX5-210ENST00000481323 562 ntTSL 3 BASIC23.64■■□□□ 1.37
UBE3BQ7Z3V4 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC23.64■■□□□ 1.37
UBE3BQ7Z3V4 CLN6-204ENST00000564752 900 ntTSL 3 BASIC23.64■■□□□ 1.37
UBE3BQ7Z3V4 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC23.64■■□□□ 1.37
UBE3BQ7Z3V4 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC23.64■■□□□ 1.37
UBE3BQ7Z3V4 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
UBE3BQ7Z3V4 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
UBE3BQ7Z3V4 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC23.64■■□□□ 1.37
UBE3BQ7Z3V4 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC23.64■■□□□ 1.37
UBE3BQ7Z3V4 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
UBE3BQ7Z3V4 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
UBE3BQ7Z3V4 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
UBE3BQ7Z3V4 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC23.63■■□□□ 1.37
UBE3BQ7Z3V4 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
UBE3BQ7Z3V4 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
UBE3BQ7Z3V4 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
UBE3BQ7Z3V4 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC23.63■■□□□ 1.37
UBE3BQ7Z3V4 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC23.63■■□□□ 1.37
UBE3BQ7Z3V4 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
UBE3BQ7Z3V4 AL358472.4-201ENST00000633140 710 ntBASIC23.63■■□□□ 1.37
UBE3BQ7Z3V4 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
UBE3BQ7Z3V4 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC23.63■■□□□ 1.37
UBE3BQ7Z3V4 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC23.63■■□□□ 1.37
UBE3BQ7Z3V4 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC23.62■■□□□ 1.37
UBE3BQ7Z3V4 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
UBE3BQ7Z3V4 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC23.62■■□□□ 1.37
UBE3BQ7Z3V4 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC23.62■■□□□ 1.37
UBE3BQ7Z3V4 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
UBE3BQ7Z3V4 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
UBE3BQ7Z3V4 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC23.62■■□□□ 1.37
UBE3BQ7Z3V4 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
UBE3BQ7Z3V4 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC23.62■■□□□ 1.37
UBE3BQ7Z3V4 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms