Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 GAD2-202ENST00000376248 680 ntTSL 5 BASIC13.58□□□□□ -0.24
COL7A1Q02388 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC13.58□□□□□ -0.24
COL7A1Q02388 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC13.58□□□□□ -0.24
COL7A1Q02388 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL7A1Q02388 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC13.58□□□□□ -0.24
COL7A1Q02388 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL7A1Q02388 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL7A1Q02388 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL7A1Q02388 AL031284.1-201ENST00000419297 478 ntBASIC13.58□□□□□ -0.24
COL7A1Q02388 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC13.58□□□□□ -0.24
COL7A1Q02388 AC098831.1-202ENST00000438821 336 ntBASIC13.58□□□□□ -0.24
COL7A1Q02388 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
COL7A1Q02388 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
COL7A1Q02388 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC13.58□□□□□ -0.24
COL7A1Q02388 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL7A1Q02388 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC13.57□□□□□ -0.24
COL7A1Q02388 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL7A1Q02388 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL7A1Q02388 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL7A1Q02388 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL7A1Q02388 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL7A1Q02388 URGCP-206ENST00000446958 365 ntTSL 2 BASIC13.57□□□□□ -0.24
COL7A1Q02388 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC13.57□□□□□ -0.24
COL7A1Q02388 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC13.57□□□□□ -0.24
COL7A1Q02388 BNIP3P18-201ENST00000593976 575 ntBASIC13.57□□□□□ -0.24
COL7A1Q02388 AC092667.1-201ENST00000434301 2586 ntBASIC13.57□□□□□ -0.24
COL7A1Q02388 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
COL7A1Q02388 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL7A1Q02388 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL7A1Q02388 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL7A1Q02388 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL7A1Q02388 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL7A1Q02388 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC13.57□□□□□ -0.24
COL7A1Q02388 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC13.57□□□□□ -0.24
COL7A1Q02388 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC13.57□□□□□ -0.24
COL7A1Q02388 AC073648.2-201ENST00000510116 352 ntBASIC13.57□□□□□ -0.24
COL7A1Q02388 AC090616.6-201ENST00000582640 721 ntBASIC13.57□□□□□ -0.24
COL7A1Q02388 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL7A1Q02388 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
COL7A1Q02388 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL7A1Q02388 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL7A1Q02388 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL7A1Q02388 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC13.57□□□□□ -0.24
COL7A1Q02388 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL7A1Q02388 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC13.57□□□□□ -0.24
COL7A1Q02388 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC13.57□□□□□ -0.24
COL7A1Q02388 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC13.57□□□□□ -0.24
COL7A1Q02388 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL7A1Q02388 CD63-204ENST00000546939 779 ntTSL 3 BASIC13.57□□□□□ -0.24
COL7A1Q02388 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC13.57□□□□□ -0.24
COL7A1Q02388 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
COL7A1Q02388 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL7A1Q02388 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL7A1Q02388 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL7A1Q02388 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
COL7A1Q02388 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL7A1Q02388 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL7A1Q02388 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL7A1Q02388 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL7A1Q02388 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL7A1Q02388 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL7A1Q02388 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC13.56□□□□□ -0.24
COL7A1Q02388 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL7A1Q02388 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
COL7A1Q02388 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC13.56□□□□□ -0.24
COL7A1Q02388 AP005212.1-201ENST00000581547 1997 ntBASIC13.56□□□□□ -0.24
COL7A1Q02388 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL7A1Q02388 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL7A1Q02388 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL7A1Q02388 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC13.56□□□□□ -0.24
COL7A1Q02388 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL7A1Q02388 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC13.56□□□□□ -0.24
COL7A1Q02388 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC13.56□□□□□ -0.24
COL7A1Q02388 RPSAP43-201ENST00000402237 625 ntBASIC13.56□□□□□ -0.24
COL7A1Q02388 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC13.56□□□□□ -0.24
COL7A1Q02388 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC13.56□□□□□ -0.24
COL7A1Q02388 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC13.56□□□□□ -0.24
COL7A1Q02388 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
COL7A1Q02388 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC13.56□□□□□ -0.24
COL7A1Q02388 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC13.56□□□□□ -0.24
COL7A1Q02388 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC13.56□□□□□ -0.24
COL7A1Q02388 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC13.56□□□□□ -0.24
COL7A1Q02388 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC13.56□□□□□ -0.24
COL7A1Q02388 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
COL7A1Q02388 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL7A1Q02388 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL7A1Q02388 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL7A1Q02388 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC13.55□□□□□ -0.24
COL7A1Q02388 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL7A1Q02388 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
COL7A1Q02388 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
COL7A1Q02388 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL7A1Q02388 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL7A1Q02388 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL7A1Q02388 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC13.55□□□□□ -0.24
COL7A1Q02388 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC13.55□□□□□ -0.24
COL7A1Q02388 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL7A1Q02388 AC027601.4-201ENST00000611259 610 ntBASIC13.55□□□□□ -0.24
COL7A1Q02388 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC13.55□□□□□ -0.24
COL7A1Q02388 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms