Protein–RNA interactions for Protein: P46736

BRCC3, Lys-63-specific deubiquitinase BRCC36, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3P46736 AP000523.1-201ENST00000398242 1049 ntBASIC20.19■□□□□ 0.82
BRCC3P46736 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCC3P46736 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
BRCC3P46736 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
BRCC3P46736 AL671277.2-201ENST00000458060 996 ntBASIC20.19■□□□□ 0.82
BRCC3P46736 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.19■□□□□ 0.82
BRCC3P46736 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.19■□□□□ 0.82
BRCC3P46736 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
BRCC3P46736 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
BRCC3P46736 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCC3P46736 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCC3P46736 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.19■□□□□ 0.82
BRCC3P46736 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCC3P46736 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.19■□□□□ 0.82
BRCC3P46736 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCC3P46736 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCC3P46736 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.19■□□□□ 0.82
BRCC3P46736 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.19■□□□□ 0.82
BRCC3P46736 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
BRCC3P46736 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.18■□□□□ 0.82
BRCC3P46736 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRCC3P46736 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRCC3P46736 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRCC3P46736 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BRCC3P46736 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.18■□□□□ 0.82
BRCC3P46736 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BRCC3P46736 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
BRCC3P46736 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.18■□□□□ 0.82
BRCC3P46736 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.18■□□□□ 0.82
BRCC3P46736 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.18■□□□□ 0.82
BRCC3P46736 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.18■□□□□ 0.82
BRCC3P46736 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BRCC3P46736 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.18■□□□□ 0.82
BRCC3P46736 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.18■□□□□ 0.82
BRCC3P46736 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
BRCC3P46736 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BRCC3P46736 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.18■□□□□ 0.82
BRCC3P46736 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BRCC3P46736 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRCC3P46736 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRCC3P46736 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.18■□□□□ 0.82
BRCC3P46736 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
BRCC3P46736 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRCC3P46736 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRCC3P46736 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRCC3P46736 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRCC3P46736 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRCC3P46736 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRCC3P46736 SPDYE15P-201ENST00000424157 909 ntBASIC20.17■□□□□ 0.82
BRCC3P46736 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC20.17■□□□□ 0.82
BRCC3P46736 MCCD1P1-208ENST00000445732 328 ntBASIC20.17■□□□□ 0.82
BRCC3P46736 AC112907.2-201ENST00000448639 330 ntBASIC20.17■□□□□ 0.82
BRCC3P46736 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.17■□□□□ 0.82
BRCC3P46736 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.17■□□□□ 0.82
BRCC3P46736 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.17■□□□□ 0.82
BRCC3P46736 FAM86EP-206ENST00000510506 987 ntBASIC20.17■□□□□ 0.82
BRCC3P46736 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.17■□□□□ 0.82
BRCC3P46736 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.17■□□□□ 0.82
BRCC3P46736 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.17■□□□□ 0.82
BRCC3P46736 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRCC3P46736 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
BRCC3P46736 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
BRCC3P46736 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.17■□□□□ 0.82
BRCC3P46736 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.17■□□□□ 0.82
BRCC3P46736 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRCC3P46736 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRCC3P46736 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRCC3P46736 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.17■□□□□ 0.82
BRCC3P46736 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.17■□□□□ 0.82
BRCC3P46736 AC007952.6-201ENST00000573168 2673 ntBASIC20.17■□□□□ 0.82
BRCC3P46736 AC003957.1-201ENST00000625108 2673 ntBASIC20.17■□□□□ 0.82
BRCC3P46736 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.17■□□□□ 0.82
BRCC3P46736 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC20.16■□□□□ 0.82
BRCC3P46736 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCC3P46736 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCC3P46736 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
BRCC3P46736 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
BRCC3P46736 IRX1P1-201ENST00000438849 1838 ntBASIC20.16■□□□□ 0.82
BRCC3P46736 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.16■□□□□ 0.82
BRCC3P46736 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCC3P46736 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCC3P46736 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20.16■□□□□ 0.82
BRCC3P46736 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
BRCC3P46736 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCC3P46736 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.16■□□□□ 0.82
BRCC3P46736 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.16■□□□□ 0.82
BRCC3P46736 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
BRCC3P46736 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCC3P46736 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.16■□□□□ 0.82
BRCC3P46736 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCC3P46736 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
BRCC3P46736 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCC3P46736 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.16■□□□□ 0.82
BRCC3P46736 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.15■□□□□ 0.82
BRCC3P46736 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.15■□□□□ 0.82
BRCC3P46736 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.15■□□□□ 0.82
BRCC3P46736 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
BRCC3P46736 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.15■□□□□ 0.82
BRCC3P46736 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
BRCC3P46736 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms