Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
PTPN4P29074 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.03■□□□□ 0.64
PTPN4P29074 AC124016.1-201ENST00000609552 612 ntBASIC19.03■□□□□ 0.64
PTPN4P29074 AL023875.1-201ENST00000640777 796 ntBASIC19.03■□□□□ 0.64
PTPN4P29074 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN4P29074 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.03■□□□□ 0.64
PTPN4P29074 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
PTPN4P29074 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN4P29074 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN4P29074 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.03■□□□□ 0.64
PTPN4P29074 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
PTPN4P29074 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.02■□□□□ 0.64
PTPN4P29074 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN4P29074 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.02■□□□□ 0.64
PTPN4P29074 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.02■□□□□ 0.64
PTPN4P29074 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN4P29074 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.02■□□□□ 0.64
PTPN4P29074 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN4P29074 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN4P29074 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN4P29074 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN4P29074 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN4P29074 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN4P29074 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN4P29074 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN4P29074 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN4P29074 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.02■□□□□ 0.64
PTPN4P29074 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN4P29074 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN4P29074 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN4P29074 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN4P29074 AC239809.2-201ENST00000415381 517 ntBASIC19.02■□□□□ 0.64
PTPN4P29074 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
PTPN4P29074 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.02■□□□□ 0.64
PTPN4P29074 SNORA78-201ENST00000459373 127 ntBASIC19.02■□□□□ 0.64
PTPN4P29074 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.02■□□□□ 0.64
PTPN4P29074 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.02■□□□□ 0.64
PTPN4P29074 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
PTPN4P29074 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN4P29074 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN4P29074 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN4P29074 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
PTPN4P29074 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
PTPN4P29074 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.63
PTPN4P29074 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.02■□□□□ 0.63
PTPN4P29074 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.02■□□□□ 0.63
PTPN4P29074 AP001271.2-201ENST00000624018 1556 ntBASIC19.02■□□□□ 0.63
PTPN4P29074 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
PTPN4P29074 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
PTPN4P29074 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN4P29074 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN4P29074 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN4P29074 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.01■□□□□ 0.63
PTPN4P29074 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
PTPN4P29074 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN4P29074 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
PTPN4P29074 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
PTPN4P29074 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.01■□□□□ 0.63
PTPN4P29074 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN4P29074 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN4P29074 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
PTPN4P29074 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.01■□□□□ 0.63
PTPN4P29074 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.01■□□□□ 0.63
PTPN4P29074 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN4P29074 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.01■□□□□ 0.63
PTPN4P29074 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.01■□□□□ 0.63
PTPN4P29074 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.01■□□□□ 0.63
PTPN4P29074 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN4P29074 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.01■□□□□ 0.63
PTPN4P29074 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.01■□□□□ 0.63
PTPN4P29074 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.01■□□□□ 0.63
PTPN4P29074 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.01■□□□□ 0.63
PTPN4P29074 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.01■□□□□ 0.63
PTPN4P29074 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN4P29074 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN4P29074 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.01■□□□□ 0.63
PTPN4P29074 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN4P29074 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN4P29074 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.01■□□□□ 0.63
PTPN4P29074 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN4P29074 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19■□□□□ 0.63
PTPN4P29074 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
PTPN4P29074 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
PTPN4P29074 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19■□□□□ 0.63
PTPN4P29074 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19■□□□□ 0.63
PTPN4P29074 AC012618.2-201ENST00000428058 849 ntBASIC19■□□□□ 0.63
PTPN4P29074 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19■□□□□ 0.63
PTPN4P29074 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms